2026-10-28T14:49:47,168 Created temporary directory: /tmp/pip-ephem-wheel-cache-ww67yeai 2026-10-28T14:49:47,170 Created temporary directory: /tmp/pip-build-tracker-6m3j099e 2026-10-28T14:49:47,171 Initialized build tracking at /tmp/pip-build-tracker-6m3j099e 2026-10-28T14:49:47,171 Created build tracker: /tmp/pip-build-tracker-6m3j099e 2026-10-28T14:49:47,172 Entered build tracker: /tmp/pip-build-tracker-6m3j099e 2026-10-28T14:49:47,172 Created temporary directory: /tmp/pip-wheel-_hauxvsm 2026-10-28T14:49:47,175 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-28T14:49:47,178 Created temporary directory: /tmp/pip-ephem-wheel-cache-0lu9xfk1 2026-10-28T14:49:47,199 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-28T14:49:47,203 2 location(s) to search for versions of orfdata: 2026-10-28T14:49:47,203 * https://pypi.org/simple/orfdata/ 2026-10-28T14:49:47,203 * https://www.piwheels.org/simple/orfdata/ 2026-10-28T14:49:47,203 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-10-28T14:49:47,204 Getting page https://pypi.org/simple/orfdata/ 2026-10-28T14:49:47,206 Found index url https://pypi.org/simple 2026-10-28T14:49:47,361 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-10-28T14:49:47,375 Skipping link: No binaries permitted for orfdata: 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Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/0d/2b/8a1cf6202277071564f33ec9b1c23f9169b59d6b24aaaaeb07114d584f39/orfdata-0.38.2-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,424 Found link https://files.pythonhosted.org/packages/31/c7/6cbf4bd3b6313d41d9f9fe8f64318f40651c61ad793fcf2f554dd4d6bebd/orfdata-0.38.2.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.38.2 2026-10-28T14:49:47,425 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/ee/a3/b89e60a0cbec810ca17422aec8a680bffd57c39a70b985913dad447bdae1/orfdata-0.39.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,426 Found link https://files.pythonhosted.org/packages/d7/c8/f6f8144382cbb4f97023936babb7b072de0e25128d9181c8114b2ca06e83/orfdata-0.39.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.39.0 2026-10-28T14:49:47,426 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/4b/6b/0b41720d0bdf51527920d20c2bdac7ee80329a458e6a685f4cfcce82040f/orfdata-0.39.1-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,427 Found link https://files.pythonhosted.org/packages/c7/73/787b01d73cbd236688fc5aa5a27a87330445cdd616c30b78841163e6ff7d/orfdata-0.39.1.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.39.1 2026-10-28T14:49:47,428 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/99/28/439d153b8b62273349b84ad0039cb3c954c37ac29810a727c88500535886/orfdata-0.40.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,429 Found link https://files.pythonhosted.org/packages/1f/99/bca943d4a01f16a07e1e19d9d2fea7a98ca63ac775cb62b4631efb291023/orfdata-0.40.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.40.0 2026-10-28T14:49:47,430 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/2b/b1/2d1cb807b905a8ecb4036383e6932d52d8cf41b5f89778ec83a62deb015a/orfdata-0.41.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,430 Found link https://files.pythonhosted.org/packages/a1/d7/ab033e3637432a9f30eb9fa23cff8139bd5708e4d7eb14a1bf79715668b8/orfdata-0.41.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.41.0 2026-10-28T14:49:47,431 Fetching project page and analyzing links: https://www.piwheels.org/simple/orfdata/ 2026-10-28T14:49:47,432 Getting page https://www.piwheels.org/simple/orfdata/ 2026-10-28T14:49:47,434 Found index url https://www.piwheels.org/simple 2026-10-28T14:49:47,626 Fetched page https://www.piwheels.org/simple/orfdata/ as text/html 2026-10-28T14:49:47,637 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.40.0-py3-none-any.whl#sha256=849904ecbdbcb5565dee505b3119e03414111667000b603517be370a24059322 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,637 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.39.1-py3-none-any.whl#sha256=2a5c2768701ca636d511a0f4cc9ca8877d919d65843817481bc08504b9726fcd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,638 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.39.0-py3-none-any.whl#sha256=2842885510203652476dfa8cb15d3a018ee725203d7d55addb369c76fa935553 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,638 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.38.2-py3-none-any.whl#sha256=04f2870e2f5a0bc80370305fe7850ddce27fd32ab98827cadf2bb041074e1e17 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,639 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.38.1-py3-none-any.whl#sha256=e11d2bb3fb10e4197496e4372bf9aae5ad10cf62f136b0a00b7ba0d08f408e45 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,639 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.37.0-py3-none-any.whl#sha256=7b081819b628134550a9900557206e6b3ea600f3900c3ad0e830ad4f676354e4 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,639 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.36.0-py3-none-any.whl#sha256=05a9e84fb23e55c171e2b64a94ccdb3fcaca34ab7f2e36cb9245bbca150b7460 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,640 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.35.0-py3-none-any.whl#sha256=bbbf4e552150417fb384c8a699142328e0145b5ff9d2ce4f2ac00c429522037b (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,640 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.34.1-py3-none-any.whl#sha256=9b84448b6d1fb76a8177077e023e7ca40997eea9c7d30cf8d9cbfc4cd43443c0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T14:49:47,641 Skipping link: No binaries permitted for orfdata: 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https://www.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T14:49:47,654 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T14:49:47,654 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T14:49:47,654 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T14:49:47,655 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T14:49:47,655 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-28T14:49:47,656 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-28T14:49:47,680 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-28T14:49:47,698 Collecting orfdata==0.41.0 2026-10-28T14:49:47,700 Created temporary directory: /tmp/pip-unpack-zt7gbh5z 2026-10-28T14:49:47,933 Downloading orfdata-0.41.0.tar.gz (3.6 MB) 2026-10-28T14:49:53,292 Added orfdata==0.41.0 from https://files.pythonhosted.org/packages/a1/d7/ab033e3637432a9f30eb9fa23cff8139bd5708e4d7eb14a1bf79715668b8/orfdata-0.41.0.tar.gz to build tracker '/tmp/pip-build-tracker-6m3j099e' 2026-10-28T14:49:53,297 Created temporary directory: /tmp/pip-build-env-7b26h4i8 2026-10-28T14:49:53,302 Installing build dependencies: started 2026-10-28T14:49:53,303 Running command pip subprocess to install build dependencies 2026-10-28T14:49:54,433 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-28T14:49:54,847 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-28T14:49:54,871 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-28T14:49:56,707 Collecting setuptools>=77 2026-10-28T14:49:56,708 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata 2026-10-28T14:49:56,723 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB) 2026-10-28T14:49:56,962 Collecting wheel 2026-10-28T14:49:56,963 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-28T14:49:56,976 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-28T14:49:57,160 Collecting packaging>=24.0 2026-10-28T14:49:57,161 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-28T14:49:57,174 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-28T14:49:57,373 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-28T14:49:57,400 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-28T14:49:57,476 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-10-28T14:49:57,514 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-28T14:49:57,542 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-28T14:49:57,617 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-10-28T14:50:00,432 Installing collected packages: setuptools, packaging, wheel 2026-10-28T14:50:03,437 Creating /tmp/pip-build-env-7b26h4i8/overlay/local/bin 2026-10-28T14:50:03,440 changing mode of /tmp/pip-build-env-7b26h4i8/overlay/local/bin/wheel to 755 2026-10-28T14:50:03,461 Successfully installed packaging-26.3 setuptools-84.2.1 wheel-0.48.0 2026-10-28T14:50:03,745 Installing build dependencies: finished with status 'done' 2026-10-28T14:50:03,752 Getting requirements to build wheel: started 2026-10-28T14:50:03,753 Running command Getting requirements to build wheel 2026-10-28T14:50:04,460 running egg_info 2026-10-28T14:50:04,466 writing orfdata.egg-info/PKG-INFO 2026-10-28T14:50:04,472 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-28T14:50:04,474 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-28T14:50:04,478 writing requirements to orfdata.egg-info/requires.txt 2026-10-28T14:50:04,479 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-28T14:50:04,513 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-28T14:50:04,533 reading manifest template 'MANIFEST.in' 2026-10-28T14:50:05,077 adding license file 'LICENSE' 2026-10-28T14:50:05,096 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-28T14:50:05,195 Getting requirements to build wheel: finished with status 'done' 2026-10-28T14:50:05,198 Created temporary directory: /tmp/pip-modern-metadata-052c6xj4 2026-10-28T14:50:05,200 Preparing metadata (pyproject.toml): started 2026-10-28T14:50:05,202 Running command Preparing metadata (pyproject.toml) 2026-10-28T14:50:05,890 running dist_info 2026-10-28T14:50:05,900 creating /tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info 2026-10-28T14:50:05,901 writing /tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info/PKG-INFO 2026-10-28T14:50:05,908 writing dependency_links to /tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info/dependency_links.txt 2026-10-28T14:50:05,909 writing entry points to /tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info/entry_points.txt 2026-10-28T14:50:05,913 writing requirements to /tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info/requires.txt 2026-10-28T14:50:05,914 writing top-level names to /tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info/top_level.txt 2026-10-28T14:50:05,915 writing manifest file '/tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info/SOURCES.txt' 2026-10-28T14:50:05,945 reading manifest file '/tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info/SOURCES.txt' 2026-10-28T14:50:05,947 reading manifest template 'MANIFEST.in' 2026-10-28T14:50:06,473 adding license file 'LICENSE' 2026-10-28T14:50:06,488 writing manifest file '/tmp/pip-modern-metadata-052c6xj4/orfdata.egg-info/SOURCES.txt' 2026-10-28T14:50:06,489 creating '/tmp/pip-modern-metadata-052c6xj4/orfdata-0.41.0.dist-info' 2026-10-28T14:50:06,616 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-28T14:50:06,620 Source in /tmp/pip-wheel-_hauxvsm/orfdata_8aeb135484ef4354bf5d0fe164e69e43 has version 0.41.0, which satisfies requirement orfdata==0.41.0 from https://files.pythonhosted.org/packages/a1/d7/ab033e3637432a9f30eb9fa23cff8139bd5708e4d7eb14a1bf79715668b8/orfdata-0.41.0.tar.gz 2026-10-28T14:50:06,621 Removed orfdata==0.41.0 from https://files.pythonhosted.org/packages/a1/d7/ab033e3637432a9f30eb9fa23cff8139bd5708e4d7eb14a1bf79715668b8/orfdata-0.41.0.tar.gz from build tracker '/tmp/pip-build-tracker-6m3j099e' 2026-10-28T14:50:06,628 Created temporary directory: /tmp/pip-unpack-qybvwprb 2026-10-28T14:50:06,628 Building wheels for collected packages: orfdata 2026-10-28T14:50:06,633 Created temporary directory: /tmp/pip-wheel-1ay1xa7y 2026-10-28T14:50:06,633 Destination directory: /tmp/pip-wheel-1ay1xa7y 2026-10-28T14:50:06,635 Building wheel for orfdata (pyproject.toml): started 2026-10-28T14:50:06,639 Running command Building wheel for orfdata (pyproject.toml) 2026-10-28T14:50:07,306 running bdist_wheel 2026-10-28T14:50:07,323 running build 2026-10-28T14:50:07,324 running build_py 2026-10-28T14:50:07,331 creating build/lib/orfdata 2026-10-28T14:50:07,333 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-28T14:50:07,335 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-28T14:50:07,337 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-28T14:50:07,341 copying orfdata/cli.py -> build/lib/orfdata 2026-10-28T14:50:07,343 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-28T14:50:07,346 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-28T14:50:07,350 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-28T14:50:07,352 copying orfdata/viral_annotation.py -> build/lib/orfdata 2026-10-28T14:50:07,354 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-28T14:50:07,357 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-28T14:50:07,359 copying orfdata/fasta.py -> build/lib/orfdata 2026-10-28T14:50:07,361 copying orfdata/download_cli.py -> build/lib/orfdata 2026-10-28T14:50:07,364 copying orfdata/install.py -> build/lib/orfdata 2026-10-28T14:50:07,366 copying orfdata/genbank.py -> build/lib/orfdata 2026-10-28T14:50:07,369 copying orfdata/viral_subsets.py -> build/lib/orfdata 2026-10-28T14:50:07,371 copying orfdata/net.py -> build/lib/orfdata 2026-10-28T14:50:07,373 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-28T14:50:07,375 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-28T14:50:07,378 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-28T14:50:07,380 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-28T14:50:07,382 copying orfdata/version.py -> build/lib/orfdata 2026-10-28T14:50:07,384 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-28T14:50:07,386 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-28T14:50:07,388 copying orfdata/reference.py -> build/lib/orfdata 2026-10-28T14:50:07,391 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-28T14:50:07,393 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-28T14:50:07,395 copying orfdata/reference_ledger.py -> build/lib/orfdata 2026-10-28T14:50:07,397 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-28T14:50:07,400 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-28T14:50:07,402 copying orfdata/downloads.py -> build/lib/orfdata 2026-10-28T14:50:07,404 copying orfdata/viral_cli.py -> build/lib/orfdata 2026-10-28T14:50:07,407 copying orfdata/artifact_archives.py -> build/lib/orfdata 2026-10-28T14:50:07,409 copying orfdata/refseq.py -> build/lib/orfdata 2026-10-28T14:50:07,411 copying orfdata/cli_output.py -> build/lib/orfdata 2026-10-28T14:50:07,413 copying orfdata/viral_coverage.py -> build/lib/orfdata 2026-10-28T14:50:07,415 copying orfdata/record_sources.py -> build/lib/orfdata 2026-10-28T14:50:07,417 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-28T14:50:07,419 copying orfdata/numeric_vector.py -> build/lib/orfdata 2026-10-28T14:50:07,421 copying orfdata/viral_panel.py -> build/lib/orfdata 2026-10-28T14:50:07,424 copying orfdata/rna.py -> build/lib/orfdata 2026-10-28T14:50:07,426 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-28T14:50:07,428 copying orfdata/viral.py -> build/lib/orfdata 2026-10-28T14:50:07,430 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-28T14:50:07,433 copying orfdata/reference_table.py -> build/lib/orfdata 2026-10-28T14:50:07,435 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-28T14:50:07,437 copying orfdata/build.py -> build/lib/orfdata 2026-10-28T14:50:07,440 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-28T14:50:07,442 copying orfdata/model.py -> build/lib/orfdata 2026-10-28T14:50:07,445 copying orfdata/gtf.py -> build/lib/orfdata 2026-10-28T14:50:07,447 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-28T14:50:07,450 copying orfdata/viral_registry.py -> build/lib/orfdata 2026-10-28T14:50:07,453 creating build/lib/orfdata/sources 2026-10-28T14:50:07,454 copying orfdata/sources/pfizer_vendor.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,457 copying orfdata/sources/pfizer_lineage.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,459 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,461 copying orfdata/sources/pfizer_native.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,464 copying orfdata/sources/pfizer_definitions.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,466 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,468 copying orfdata/sources/pfizer_dataset.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,471 copying orfdata/sources/pfizer_attribution.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,473 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,475 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,478 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,481 copying orfdata/sources/pfizer_queries.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,483 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,485 copying orfdata/sources/pfizer_evidence.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,488 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,490 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,492 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,495 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,496 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-10-28T14:50:07,500 running egg_info 2026-10-28T14:50:07,510 writing orfdata.egg-info/PKG-INFO 2026-10-28T14:50:07,517 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-28T14:50:07,518 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-28T14:50:07,522 writing requirements to orfdata.egg-info/requires.txt 2026-10-28T14:50:07,523 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-28T14:50:07,544 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-28T14:50:07,564 reading manifest template 'MANIFEST.in' 2026-10-28T14:50:08,124 adding license file 'LICENSE' 2026-10-28T14:50:08,143 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-28T14:50:08,159 creating build/lib/orfdata/data/uorf-evidence 2026-10-28T14:50:08,161 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-28T14:50:08,163 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-28T14:50:08,165 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-28T14:50:08,167 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-28T14:50:08,179 creating build/lib/orfdata/data/orf-evidence 2026-10-28T14:50:08,180 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-28T14:50:08,183 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-28T14:50:08,185 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-28T14:50:08,187 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-28T14:50:08,210 creating build/lib/orfdata/data/ires 2026-10-28T14:50:08,211 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-28T14:50:08,214 creating build/lib/orfdata/data/viral 2026-10-28T14:50:08,215 copying orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/lib/orfdata/data/viral 2026-10-28T14:50:08,218 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-28T14:50:08,221 copying orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/lib/orfdata/data/viral 2026-10-28T14:50:08,225 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-28T14:50:08,228 copying orfdata/data/viral/subsets.yaml -> build/lib/orfdata/data/viral 2026-10-28T14:50:08,230 copying orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/lib/orfdata/data/viral 2026-10-28T14:50:08,234 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-28T14:50:08,240 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-28T14:50:08,244 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-28T14:50:08,247 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-28T14:50:08,269 installing to build/bdist.linux-armv7l/wheel 2026-10-28T14:50:08,270 running install 2026-10-28T14:50:08,293 running install_lib 2026-10-28T14:50:08,299 creating build/bdist.linux-armv7l/wheel 2026-10-28T14:50:08,302 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-28T14:50:08,303 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,306 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,308 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,312 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,315 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,318 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,323 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,326 copying build/lib/orfdata/viral_annotation.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,329 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,332 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,334 copying build/lib/orfdata/fasta.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,336 copying build/lib/orfdata/download_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,339 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,341 copying build/lib/orfdata/genbank.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,344 copying build/lib/orfdata/viral_subsets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,346 copying build/lib/orfdata/net.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,349 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,351 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,354 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,356 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,359 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,361 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,364 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,367 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,370 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,373 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,376 copying build/lib/orfdata/reference_ledger.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,379 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,383 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,385 copying build/lib/orfdata/downloads.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,389 copying build/lib/orfdata/viral_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,392 copying build/lib/orfdata/artifact_archives.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,395 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,399 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-28T14:50:08,401 copying build/lib/orfdata/sources/pfizer_vendor.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,404 copying build/lib/orfdata/sources/pfizer_lineage.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,408 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,411 copying build/lib/orfdata/sources/pfizer_native.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,415 copying build/lib/orfdata/sources/pfizer_definitions.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,418 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,422 copying build/lib/orfdata/sources/pfizer_dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,425 copying build/lib/orfdata/sources/pfizer_attribution.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,428 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,431 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,434 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,437 copying build/lib/orfdata/sources/pfizer_queries.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,440 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,442 copying build/lib/orfdata/sources/pfizer_evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,445 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,448 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,451 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,454 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,456 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T14:50:08,459 copying build/lib/orfdata/cli_output.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,461 copying build/lib/orfdata/viral_coverage.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,464 copying build/lib/orfdata/record_sources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,466 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,468 copying build/lib/orfdata/numeric_vector.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,470 copying build/lib/orfdata/viral_panel.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,473 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,475 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,477 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,480 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,483 copying build/lib/orfdata/reference_table.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,485 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,488 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,490 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,493 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,496 copying build/lib/orfdata/gtf.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,498 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,501 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-28T14:50:08,503 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-28T14:50:08,504 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-28T14:50:08,506 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-28T14:50:08,507 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-28T14:50:08,509 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-28T14:50:08,531 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-28T14:50:08,535 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-28T14:50:08,539 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-28T14:50:08,541 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-28T14:50:08,544 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-28T14:50:08,545 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T14:50:08,549 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T14:50:08,551 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T14:50:08,554 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T14:50:08,556 copying build/lib/orfdata/data/viral/subsets.yaml -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T14:50:08,558 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T14:50:08,560 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-28T14:50:08,563 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-28T14:50:08,564 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-28T14:50:08,566 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-28T14:50:08,567 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-28T14:50:08,569 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-28T14:50:08,625 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-28T14:50:08,627 copying build/lib/orfdata/viral_registry.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T14:50:08,630 running install_egg_info 2026-10-28T14:50:08,635 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.41.0-py3.11.egg-info 2026-10-28T14:50:08,647 running install_scripts 2026-10-28T14:50:08,659 creating build/bdist.linux-armv7l/wheel/orfdata-0.41.0.dist-info/WHEEL 2026-10-28T14:50:08,663 creating '/tmp/pip-wheel-1ay1xa7y/.tmp-byr8yhk8/orfdata-0.41.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-28T14:50:08,667 adding 'orfdata/__init__.py' 2026-10-28T14:50:08,669 adding 'orfdata/_pinned_genome.py' 2026-10-28T14:50:08,671 adding 'orfdata/_structure.py' 2026-10-28T14:50:08,673 adding 'orfdata/artifact_archives.py' 2026-10-28T14:50:08,677 adding 'orfdata/build.py' 2026-10-28T14:50:08,687 adding 'orfdata/catalog.py' 2026-10-28T14:50:08,689 adding 'orfdata/catalog_cli.py' 2026-10-28T14:50:08,691 adding 'orfdata/catalog_manifest.py' 2026-10-28T14:50:08,694 adding 'orfdata/catalogs.py' 2026-10-28T14:50:08,697 adding 'orfdata/cli.py' 2026-10-28T14:50:08,699 adding 'orfdata/cli_output.py' 2026-10-28T14:50:08,704 adding 'orfdata/dataset.py' 2026-10-28T14:50:08,706 adding 'orfdata/dataset_cli.py' 2026-10-28T14:50:08,709 adding 'orfdata/datasets.py' 2026-10-28T14:50:08,712 adding 'orfdata/download_cli.py' 2026-10-28T14:50:08,714 adding 'orfdata/downloads.py' 2026-10-28T14:50:08,717 adding 'orfdata/evidence.py' 2026-10-28T14:50:08,719 adding 'orfdata/evidence_summary.py' 2026-10-28T14:50:08,721 adding 'orfdata/fasta.py' 2026-10-28T14:50:08,723 adding 'orfdata/genbank.py' 2026-10-28T14:50:08,725 adding 'orfdata/genomes.py' 2026-10-28T14:50:08,727 adding 'orfdata/genomes_cli.py' 2026-10-28T14:50:08,729 adding 'orfdata/gtf.py' 2026-10-28T14:50:08,731 adding 'orfdata/initiation_context.py' 2026-10-28T14:50:08,733 adding 'orfdata/install.py' 2026-10-28T14:50:08,736 adding 'orfdata/liftover.py' 2026-10-28T14:50:08,739 adding 'orfdata/liftover_cli.py' 2026-10-28T14:50:08,741 adding 'orfdata/measurements.py' 2026-10-28T14:50:08,748 adding 'orfdata/model.py' 2026-10-28T14:50:08,749 adding 'orfdata/net.py' 2026-10-28T14:50:08,750 adding 'orfdata/numeric_vector.py' 2026-10-28T14:50:08,753 adding 'orfdata/pairing.py' 2026-10-28T14:50:08,769 adding 'orfdata/proteome.py' 2026-10-28T14:50:08,771 adding 'orfdata/proteome_cli.py' 2026-10-28T14:50:08,773 adding 'orfdata/record_sources.py' 2026-10-28T14:50:08,776 adding 'orfdata/reference.py' 2026-10-28T14:50:08,777 adding 'orfdata/reference_ledger.py' 2026-10-28T14:50:08,779 adding 'orfdata/reference_mapping.py' 2026-10-28T14:50:08,781 adding 'orfdata/reference_table.py' 2026-10-28T14:50:08,782 adding 'orfdata/refseq.py' 2026-10-28T14:50:08,785 adding 'orfdata/rna.py' 2026-10-28T14:50:08,787 adding 'orfdata/search_reference.py' 2026-10-28T14:50:08,788 adding 'orfdata/sequence.py' 2026-10-28T14:50:08,789 adding 'orfdata/version.py' 2026-10-28T14:50:08,791 adding 'orfdata/viral.py' 2026-10-28T14:50:08,794 adding 'orfdata/viral_annotation.py' 2026-10-28T14:50:08,796 adding 'orfdata/viral_cli.py' 2026-10-28T14:50:08,798 adding 'orfdata/viral_coverage.py' 2026-10-28T14:50:08,804 adding 'orfdata/viral_panel.py' 2026-10-28T14:50:08,807 adding 'orfdata/viral_registry.py' 2026-10-28T14:50:08,808 adding 'orfdata/viral_subsets.py' 2026-10-28T14:50:08,812 adding 'orfdata/data/catalogs.json' 2026-10-28T14:50:08,814 adding 'orfdata/data/chains.json' 2026-10-28T14:50:08,823 adding 'orfdata/data/datasets.json' 2026-10-28T14:50:08,825 adding 'orfdata/data/genomes.json' 2026-10-28T14:50:08,828 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-28T14:50:08,830 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-28T14:50:08,831 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-28T14:50:08,989 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-28T14:50:08,998 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-28T14:50:09,000 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-28T14:50:09,001 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-28T14:50:09,081 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-28T14:50:09,087 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-28T14:50:09,089 adding 'orfdata/data/viral/NOTICE.md' 2026-10-28T14:50:09,091 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv' 2026-10-28T14:50:09,096 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv' 2026-10-28T14:50:09,102 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv' 2026-10-28T14:50:09,103 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-28T14:50:09,105 adding 'orfdata/data/viral/subsets.yaml' 2026-10-28T14:50:09,107 adding 'orfdata/sources/__init__.py' 2026-10-28T14:50:09,109 adding 'orfdata/sources/copy.py' 2026-10-28T14:50:09,111 adding 'orfdata/sources/ingolia.py' 2026-10-28T14:50:09,114 adding 'orfdata/sources/kaabinejadian.py' 2026-10-28T14:50:09,116 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-28T14:50:09,118 adding 'orfdata/sources/openprot.py' 2026-10-28T14:50:09,120 adding 'orfdata/sources/peptideatlas.py' 2026-10-28T14:50:09,122 adding 'orfdata/sources/pfizer.py' 2026-10-28T14:50:09,125 adding 'orfdata/sources/pfizer_attribution.py' 2026-10-28T14:50:09,128 adding 'orfdata/sources/pfizer_dataset.py' 2026-10-28T14:50:09,129 adding 'orfdata/sources/pfizer_definitions.py' 2026-10-28T14:50:09,131 adding 'orfdata/sources/pfizer_evidence.py' 2026-10-28T14:50:09,133 adding 'orfdata/sources/pfizer_lineage.py' 2026-10-28T14:50:09,136 adding 'orfdata/sources/pfizer_native.py' 2026-10-28T14:50:09,138 adding 'orfdata/sources/pfizer_queries.py' 2026-10-28T14:50:09,140 adding 'orfdata/sources/pfizer_rna.py' 2026-10-28T14:50:09,142 adding 'orfdata/sources/pfizer_vendor.py' 2026-10-28T14:50:09,145 adding 'orfdata/sources/riborf.py' 2026-10-28T14:50:09,147 adding 'orfdata/sources/wang.py' 2026-10-28T14:50:09,151 adding 'orfdata-0.41.0.dist-info/licenses/LICENSE' 2026-10-28T14:50:09,153 adding 'orfdata-0.41.0.dist-info/METADATA' 2026-10-28T14:50:09,154 adding 'orfdata-0.41.0.dist-info/WHEEL' 2026-10-28T14:50:09,155 adding 'orfdata-0.41.0.dist-info/entry_points.txt' 2026-10-28T14:50:09,156 adding 'orfdata-0.41.0.dist-info/top_level.txt' 2026-10-28T14:50:09,158 adding 'orfdata-0.41.0.dist-info/RECORD' 2026-10-28T14:50:09,189 removing build/bdist.linux-armv7l/wheel 2026-10-28T14:50:09,312 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-28T14:50:09,358 Created wheel for orfdata: filename=orfdata-0.41.0-py3-none-any.whl size=2279511 sha256=4c9aa2ac84e11a7ca46f4f7a776a09850504eeaeffecd5dac3cd09ca3556db70 2026-10-28T14:50:09,359 Stored in directory: /tmp/pip-ephem-wheel-cache-0lu9xfk1/wheels/0c/58/12/a51d2217c924fe62aa44f6c90f543e3c88290513c23b314194 2026-10-28T14:50:09,374 Successfully built orfdata 2026-10-28T14:50:09,443 Removed build tracker: '/tmp/pip-build-tracker-6m3j099e'