2026-10-29T04:39:52,983 Created temporary directory: /tmp/pip-ephem-wheel-cache-_zv2zf32 2026-10-29T04:39:52,985 Created temporary directory: /tmp/pip-build-tracker-bc70gtie 2026-10-29T04:39:52,986 Initialized build tracking at /tmp/pip-build-tracker-bc70gtie 2026-10-29T04:39:52,986 Created build tracker: /tmp/pip-build-tracker-bc70gtie 2026-10-29T04:39:52,987 Entered build tracker: /tmp/pip-build-tracker-bc70gtie 2026-10-29T04:39:52,987 Created temporary directory: /tmp/pip-wheel-4pidkecj 2026-10-29T04:39:52,991 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-29T04:39:52,993 Created temporary directory: /tmp/pip-ephem-wheel-cache-rlcvn9tw 2026-10-29T04:39:53,015 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-29T04:39:53,019 2 location(s) to search for versions of orfdata: 2026-10-29T04:39:53,019 * https://pypi.org/simple/orfdata/ 2026-10-29T04:39:53,019 * https://www.piwheels.org/simple/orfdata/ 2026-10-29T04:39:53,019 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-10-29T04:39:53,020 Getting page https://pypi.org/simple/orfdata/ 2026-10-29T04:39:53,022 Found index url https://pypi.org/simple 2026-10-29T04:39:53,255 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-10-29T04:39:53,269 Skipping link: No binaries permitted for orfdata: 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Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/0d/2b/8a1cf6202277071564f33ec9b1c23f9169b59d6b24aaaaeb07114d584f39/orfdata-0.38.2-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,318 Found link https://files.pythonhosted.org/packages/31/c7/6cbf4bd3b6313d41d9f9fe8f64318f40651c61ad793fcf2f554dd4d6bebd/orfdata-0.38.2.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.38.2 2026-10-29T04:39:53,319 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/ee/a3/b89e60a0cbec810ca17422aec8a680bffd57c39a70b985913dad447bdae1/orfdata-0.39.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,320 Found link https://files.pythonhosted.org/packages/d7/c8/f6f8144382cbb4f97023936babb7b072de0e25128d9181c8114b2ca06e83/orfdata-0.39.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.39.0 2026-10-29T04:39:53,321 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/4b/6b/0b41720d0bdf51527920d20c2bdac7ee80329a458e6a685f4cfcce82040f/orfdata-0.39.1-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,322 Found link https://files.pythonhosted.org/packages/c7/73/787b01d73cbd236688fc5aa5a27a87330445cdd616c30b78841163e6ff7d/orfdata-0.39.1.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.39.1 2026-10-29T04:39:53,323 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/99/28/439d153b8b62273349b84ad0039cb3c954c37ac29810a727c88500535886/orfdata-0.40.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,323 Found link https://files.pythonhosted.org/packages/1f/99/bca943d4a01f16a07e1e19d9d2fea7a98ca63ac775cb62b4631efb291023/orfdata-0.40.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.40.0 2026-10-29T04:39:53,324 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/2b/b1/2d1cb807b905a8ecb4036383e6932d52d8cf41b5f89778ec83a62deb015a/orfdata-0.41.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,325 Found link https://files.pythonhosted.org/packages/a1/d7/ab033e3637432a9f30eb9fa23cff8139bd5708e4d7eb14a1bf79715668b8/orfdata-0.41.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.41.0 2026-10-29T04:39:53,326 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/52/d9/406ff9bce960a08271c306d0a0b6a65bdeecd04e8c4a5280b9fe46c9faac/orfdata-0.42.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,327 Found link https://files.pythonhosted.org/packages/b8/cc/8a13eb30076b53c6843ebe9b29b579333b006a61e9742930ebe7aa1f4667/orfdata-0.42.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.42.0 2026-10-29T04:39:53,327 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/75/cf/8a252951fe501bf8b57e227602f53e2ed79bf71f5e2227e5c28c0cf0e7df/orfdata-0.42.1-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,328 Found link https://files.pythonhosted.org/packages/a6/96/a214bed3fd2562c8e8755a6f2a6432f21ddd0bfb2207d4e5dfe7cbf5b31c/orfdata-0.42.1.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.42.1 2026-10-29T04:39:53,329 Fetching project page and analyzing links: https://www.piwheels.org/simple/orfdata/ 2026-10-29T04:39:53,330 Getting page https://www.piwheels.org/simple/orfdata/ 2026-10-29T04:39:53,331 Found index url https://www.piwheels.org/simple 2026-10-29T04:39:53,525 Fetched page https://www.piwheels.org/simple/orfdata/ as text/html 2026-10-29T04:39:53,537 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.42.0-py3-none-any.whl#sha256=26f6cd1a31c662897f458f49767b46b58431111961fe7a5b6097a03448cc17ae (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,537 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.41.0-py3-none-any.whl#sha256=4c9aa2ac84e11a7ca46f4f7a776a09850504eeaeffecd5dac3cd09ca3556db70 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-29T04:39:53,538 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.40.0-py3-none-any.whl#sha256=849904ecbdbcb5565dee505b3119e03414111667000b603517be370a24059322 (from 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https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-29T04:39:53,558 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-29T04:39:53,559 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-29T04:39:53,582 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-29T04:39:53,600 Collecting orfdata==0.42.1 2026-10-29T04:39:53,602 Created temporary directory: /tmp/pip-unpack-f1zezblh 2026-10-29T04:39:53,846 Downloading orfdata-0.42.1.tar.gz (3.6 MB) 2026-10-29T04:39:55,420 Added orfdata==0.42.1 from https://files.pythonhosted.org/packages/a6/96/a214bed3fd2562c8e8755a6f2a6432f21ddd0bfb2207d4e5dfe7cbf5b31c/orfdata-0.42.1.tar.gz to build tracker '/tmp/pip-build-tracker-bc70gtie' 2026-10-29T04:39:55,426 Created temporary directory: /tmp/pip-build-env-yjdtsoi6 2026-10-29T04:39:55,430 Installing build dependencies: started 2026-10-29T04:39:55,431 Running command pip subprocess to install build dependencies 2026-10-29T04:39:56,602 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-29T04:39:57,021 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-29T04:39:57,045 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-29T04:39:58,896 Collecting setuptools>=77 2026-10-29T04:39:58,898 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata 2026-10-29T04:39:58,913 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB) 2026-10-29T04:39:59,156 Collecting wheel 2026-10-29T04:39:59,157 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-29T04:39:59,171 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-29T04:39:59,359 Collecting packaging>=24.0 2026-10-29T04:39:59,360 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-29T04:39:59,374 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-29T04:39:59,567 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-29T04:39:59,594 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-29T04:39:59,669 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-10-29T04:39:59,699 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-29T04:39:59,727 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-29T04:39:59,814 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-10-29T04:40:02,599 Installing collected packages: setuptools, packaging, wheel 2026-10-29T04:40:05,444 Creating /tmp/pip-build-env-yjdtsoi6/overlay/local/bin 2026-10-29T04:40:05,446 changing mode of /tmp/pip-build-env-yjdtsoi6/overlay/local/bin/wheel to 755 2026-10-29T04:40:05,468 Successfully installed packaging-26.3 setuptools-84.2.1 wheel-0.48.0 2026-10-29T04:40:05,756 Installing build dependencies: finished with status 'done' 2026-10-29T04:40:05,766 Getting requirements to build wheel: started 2026-10-29T04:40:05,767 Running command Getting requirements to build wheel 2026-10-29T04:40:06,497 running egg_info 2026-10-29T04:40:06,503 writing orfdata.egg-info/PKG-INFO 2026-10-29T04:40:06,510 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-29T04:40:06,512 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-29T04:40:06,517 writing requirements to orfdata.egg-info/requires.txt 2026-10-29T04:40:06,518 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-29T04:40:06,553 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-29T04:40:06,573 reading manifest template 'MANIFEST.in' 2026-10-29T04:40:07,142 adding license file 'LICENSE' 2026-10-29T04:40:07,161 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-29T04:40:07,261 Getting requirements to build wheel: finished with status 'done' 2026-10-29T04:40:07,265 Created temporary directory: /tmp/pip-modern-metadata-lf2hhljl 2026-10-29T04:40:07,267 Preparing metadata (pyproject.toml): started 2026-10-29T04:40:07,268 Running command Preparing metadata (pyproject.toml) 2026-10-29T04:40:07,925 running dist_info 2026-10-29T04:40:07,935 creating /tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info 2026-10-29T04:40:07,937 writing /tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info/PKG-INFO 2026-10-29T04:40:07,944 writing dependency_links to /tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info/dependency_links.txt 2026-10-29T04:40:07,945 writing entry points to /tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info/entry_points.txt 2026-10-29T04:40:07,949 writing requirements to /tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info/requires.txt 2026-10-29T04:40:07,950 writing top-level names to /tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info/top_level.txt 2026-10-29T04:40:07,952 writing manifest file '/tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info/SOURCES.txt' 2026-10-29T04:40:07,982 reading manifest file '/tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info/SOURCES.txt' 2026-10-29T04:40:07,984 reading manifest template 'MANIFEST.in' 2026-10-29T04:40:08,563 adding license file 'LICENSE' 2026-10-29T04:40:08,578 writing manifest file '/tmp/pip-modern-metadata-lf2hhljl/orfdata.egg-info/SOURCES.txt' 2026-10-29T04:40:08,579 creating '/tmp/pip-modern-metadata-lf2hhljl/orfdata-0.42.1.dist-info' 2026-10-29T04:40:08,719 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-29T04:40:08,725 Source in /tmp/pip-wheel-4pidkecj/orfdata_fb6bd15c324a4245b43d997a7ed25b40 has version 0.42.1, which satisfies requirement orfdata==0.42.1 from https://files.pythonhosted.org/packages/a6/96/a214bed3fd2562c8e8755a6f2a6432f21ddd0bfb2207d4e5dfe7cbf5b31c/orfdata-0.42.1.tar.gz 2026-10-29T04:40:08,727 Removed orfdata==0.42.1 from https://files.pythonhosted.org/packages/a6/96/a214bed3fd2562c8e8755a6f2a6432f21ddd0bfb2207d4e5dfe7cbf5b31c/orfdata-0.42.1.tar.gz from build tracker '/tmp/pip-build-tracker-bc70gtie' 2026-10-29T04:40:08,735 Created temporary directory: /tmp/pip-unpack-k9lzgrfh 2026-10-29T04:40:08,736 Building wheels for collected packages: orfdata 2026-10-29T04:40:08,742 Created temporary directory: /tmp/pip-wheel-wlvtf5i8 2026-10-29T04:40:08,743 Destination directory: /tmp/pip-wheel-wlvtf5i8 2026-10-29T04:40:08,745 Building wheel for orfdata (pyproject.toml): started 2026-10-29T04:40:08,748 Running command Building wheel for orfdata (pyproject.toml) 2026-10-29T04:40:09,411 running bdist_wheel 2026-10-29T04:40:09,429 running build 2026-10-29T04:40:09,429 running build_py 2026-10-29T04:40:09,436 creating build/lib/orfdata 2026-10-29T04:40:09,439 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-29T04:40:09,441 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-29T04:40:09,443 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-29T04:40:09,446 copying orfdata/cli.py -> build/lib/orfdata 2026-10-29T04:40:09,449 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-29T04:40:09,451 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-29T04:40:09,455 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-29T04:40:09,458 copying orfdata/viral_annotation.py -> build/lib/orfdata 2026-10-29T04:40:09,460 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-29T04:40:09,463 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-29T04:40:09,465 copying orfdata/fasta.py -> build/lib/orfdata 2026-10-29T04:40:09,467 copying orfdata/download_cli.py -> build/lib/orfdata 2026-10-29T04:40:09,469 copying orfdata/install.py -> build/lib/orfdata 2026-10-29T04:40:09,472 copying orfdata/genbank.py -> build/lib/orfdata 2026-10-29T04:40:09,474 copying orfdata/viral_subsets.py -> build/lib/orfdata 2026-10-29T04:40:09,476 copying orfdata/net.py -> build/lib/orfdata 2026-10-29T04:40:09,478 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-29T04:40:09,480 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-29T04:40:09,482 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-29T04:40:09,484 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-29T04:40:09,487 copying orfdata/version.py -> build/lib/orfdata 2026-10-29T04:40:09,489 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-29T04:40:09,491 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-29T04:40:09,493 copying orfdata/reference.py -> build/lib/orfdata 2026-10-29T04:40:09,496 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-29T04:40:09,498 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-29T04:40:09,500 copying orfdata/reference_ledger.py -> build/lib/orfdata 2026-10-29T04:40:09,502 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-29T04:40:09,504 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-29T04:40:09,507 copying orfdata/downloads.py -> build/lib/orfdata 2026-10-29T04:40:09,509 copying orfdata/viral_cli.py -> build/lib/orfdata 2026-10-29T04:40:09,511 copying orfdata/artifact_archives.py -> build/lib/orfdata 2026-10-29T04:40:09,514 copying orfdata/refseq.py -> build/lib/orfdata 2026-10-29T04:40:09,516 copying orfdata/cli_output.py -> build/lib/orfdata 2026-10-29T04:40:09,518 copying orfdata/viral_coverage.py -> build/lib/orfdata 2026-10-29T04:40:09,520 copying orfdata/record_sources.py -> build/lib/orfdata 2026-10-29T04:40:09,523 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-29T04:40:09,524 copying orfdata/numeric_vector.py -> build/lib/orfdata 2026-10-29T04:40:09,526 copying orfdata/viral_panel.py -> build/lib/orfdata 2026-10-29T04:40:09,530 copying orfdata/rna.py -> build/lib/orfdata 2026-10-29T04:40:09,532 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-29T04:40:09,534 copying orfdata/viral.py -> build/lib/orfdata 2026-10-29T04:40:09,537 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-29T04:40:09,540 copying orfdata/reference_table.py -> build/lib/orfdata 2026-10-29T04:40:09,542 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-29T04:40:09,545 copying orfdata/build.py -> build/lib/orfdata 2026-10-29T04:40:09,547 copying orfdata/data_resources.py -> build/lib/orfdata 2026-10-29T04:40:09,549 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-29T04:40:09,552 copying orfdata/model.py -> build/lib/orfdata 2026-10-29T04:40:09,555 copying orfdata/gtf.py -> build/lib/orfdata 2026-10-29T04:40:09,557 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-29T04:40:09,559 copying orfdata/viral_registry.py -> build/lib/orfdata 2026-10-29T04:40:09,563 creating build/lib/orfdata/sources 2026-10-29T04:40:09,564 copying orfdata/sources/pfizer_vendor.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,566 copying orfdata/sources/pfizer_lineage.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,569 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,571 copying orfdata/sources/pfizer_native.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,574 copying orfdata/sources/pfizer_definitions.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,576 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,578 copying orfdata/sources/pfizer_dataset.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,581 copying orfdata/sources/pfizer_attribution.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,584 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,586 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,588 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,591 copying orfdata/sources/pfizer_queries.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,593 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,596 copying orfdata/sources/pfizer_evidence.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,598 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,600 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,602 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,604 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,606 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-10-29T04:40:09,610 running egg_info 2026-10-29T04:40:09,620 writing orfdata.egg-info/PKG-INFO 2026-10-29T04:40:09,626 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-29T04:40:09,628 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-29T04:40:09,631 writing requirements to orfdata.egg-info/requires.txt 2026-10-29T04:40:09,632 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-29T04:40:09,654 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-29T04:40:09,674 reading manifest template 'MANIFEST.in' 2026-10-29T04:40:10,267 adding license file 'LICENSE' 2026-10-29T04:40:10,286 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-29T04:40:10,304 creating build/lib/orfdata/data/uorf-evidence 2026-10-29T04:40:10,307 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-29T04:40:10,310 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-29T04:40:10,314 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-29T04:40:10,317 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-29T04:40:10,343 creating build/lib/orfdata/data/orf-evidence 2026-10-29T04:40:10,345 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-29T04:40:10,349 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-29T04:40:10,353 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-29T04:40:10,356 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-29T04:40:10,386 creating build/lib/orfdata/data/ires 2026-10-29T04:40:10,387 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-29T04:40:10,390 creating build/lib/orfdata/data/viral 2026-10-29T04:40:10,391 copying orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/lib/orfdata/data/viral 2026-10-29T04:40:10,395 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-29T04:40:10,398 copying orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/lib/orfdata/data/viral 2026-10-29T04:40:10,402 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-29T04:40:10,405 copying orfdata/data/viral/subsets.yaml -> build/lib/orfdata/data/viral 2026-10-29T04:40:10,408 copying orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/lib/orfdata/data/viral 2026-10-29T04:40:10,411 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-29T04:40:10,418 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-29T04:40:10,424 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-29T04:40:10,427 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-29T04:40:10,449 installing to build/bdist.linux-armv7l/wheel 2026-10-29T04:40:10,450 running install 2026-10-29T04:40:10,473 running install_lib 2026-10-29T04:40:10,479 creating build/bdist.linux-armv7l/wheel 2026-10-29T04:40:10,482 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-29T04:40:10,483 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,486 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,488 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,492 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,495 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,498 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,503 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,505 copying build/lib/orfdata/viral_annotation.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,508 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,511 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,513 copying build/lib/orfdata/fasta.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,515 copying build/lib/orfdata/download_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,518 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,520 copying build/lib/orfdata/genbank.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,523 copying build/lib/orfdata/viral_subsets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,525 copying build/lib/orfdata/net.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,527 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,530 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,532 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,535 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,538 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,540 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,543 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,545 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,547 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,549 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,552 copying build/lib/orfdata/reference_ledger.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,554 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,556 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,558 copying build/lib/orfdata/downloads.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,560 copying build/lib/orfdata/viral_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,563 copying build/lib/orfdata/artifact_archives.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,565 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,568 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-29T04:40:10,569 copying build/lib/orfdata/sources/pfizer_vendor.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,572 copying build/lib/orfdata/sources/pfizer_lineage.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,574 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,577 copying build/lib/orfdata/sources/pfizer_native.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,579 copying build/lib/orfdata/sources/pfizer_definitions.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,582 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,585 copying build/lib/orfdata/sources/pfizer_dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,587 copying build/lib/orfdata/sources/pfizer_attribution.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,590 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,592 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,595 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,597 copying build/lib/orfdata/sources/pfizer_queries.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,600 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,602 copying build/lib/orfdata/sources/pfizer_evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,605 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,607 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,609 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,611 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,613 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-29T04:40:10,616 copying build/lib/orfdata/cli_output.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,618 copying build/lib/orfdata/viral_coverage.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,620 copying build/lib/orfdata/record_sources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,623 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,625 copying build/lib/orfdata/numeric_vector.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,626 copying build/lib/orfdata/viral_panel.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,629 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,632 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,634 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,637 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,640 copying build/lib/orfdata/reference_table.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,642 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,645 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,648 copying build/lib/orfdata/data_resources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,650 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,653 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,656 copying build/lib/orfdata/gtf.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,658 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,661 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-29T04:40:10,662 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-29T04:40:10,663 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-29T04:40:10,665 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-29T04:40:10,667 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-29T04:40:10,669 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-29T04:40:10,690 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-29T04:40:10,695 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-29T04:40:10,698 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-29T04:40:10,699 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-29T04:40:10,703 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-29T04:40:10,704 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-29T04:40:10,707 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-29T04:40:10,709 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-29T04:40:10,712 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-29T04:40:10,714 copying build/lib/orfdata/data/viral/subsets.yaml -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-29T04:40:10,716 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-29T04:40:10,718 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-29T04:40:10,721 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-29T04:40:10,722 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-29T04:40:10,724 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-29T04:40:10,725 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-29T04:40:10,727 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-29T04:40:10,740 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-29T04:40:10,742 copying build/lib/orfdata/viral_registry.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-29T04:40:10,744 running install_egg_info 2026-10-29T04:40:10,749 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.42.1-py3.11.egg-info 2026-10-29T04:40:10,761 running install_scripts 2026-10-29T04:40:10,773 creating build/bdist.linux-armv7l/wheel/orfdata-0.42.1.dist-info/WHEEL 2026-10-29T04:40:10,776 creating '/tmp/pip-wheel-wlvtf5i8/.tmp-3hfc95m8/orfdata-0.42.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-29T04:40:10,779 adding 'orfdata/__init__.py' 2026-10-29T04:40:10,781 adding 'orfdata/_pinned_genome.py' 2026-10-29T04:40:10,783 adding 'orfdata/_structure.py' 2026-10-29T04:40:10,784 adding 'orfdata/artifact_archives.py' 2026-10-29T04:40:10,788 adding 'orfdata/build.py' 2026-10-29T04:40:10,797 adding 'orfdata/catalog.py' 2026-10-29T04:40:10,799 adding 'orfdata/catalog_cli.py' 2026-10-29T04:40:10,801 adding 'orfdata/catalog_manifest.py' 2026-10-29T04:40:10,803 adding 'orfdata/catalogs.py' 2026-10-29T04:40:10,806 adding 'orfdata/cli.py' 2026-10-29T04:40:10,807 adding 'orfdata/cli_output.py' 2026-10-29T04:40:10,809 adding 'orfdata/data_resources.py' 2026-10-29T04:40:10,814 adding 'orfdata/dataset.py' 2026-10-29T04:40:10,816 adding 'orfdata/dataset_cli.py' 2026-10-29T04:40:10,818 adding 'orfdata/datasets.py' 2026-10-29T04:40:10,821 adding 'orfdata/download_cli.py' 2026-10-29T04:40:10,823 adding 'orfdata/downloads.py' 2026-10-29T04:40:10,825 adding 'orfdata/evidence.py' 2026-10-29T04:40:10,827 adding 'orfdata/evidence_summary.py' 2026-10-29T04:40:10,828 adding 'orfdata/fasta.py' 2026-10-29T04:40:10,830 adding 'orfdata/genbank.py' 2026-10-29T04:40:10,831 adding 'orfdata/genomes.py' 2026-10-29T04:40:10,833 adding 'orfdata/genomes_cli.py' 2026-10-29T04:40:10,834 adding 'orfdata/gtf.py' 2026-10-29T04:40:10,836 adding 'orfdata/initiation_context.py' 2026-10-29T04:40:10,838 adding 'orfdata/install.py' 2026-10-29T04:40:10,841 adding 'orfdata/liftover.py' 2026-10-29T04:40:10,842 adding 'orfdata/liftover_cli.py' 2026-10-29T04:40:10,845 adding 'orfdata/measurements.py' 2026-10-29T04:40:10,851 adding 'orfdata/model.py' 2026-10-29T04:40:10,853 adding 'orfdata/net.py' 2026-10-29T04:40:10,854 adding 'orfdata/numeric_vector.py' 2026-10-29T04:40:10,857 adding 'orfdata/pairing.py' 2026-10-29T04:40:10,873 adding 'orfdata/proteome.py' 2026-10-29T04:40:10,875 adding 'orfdata/proteome_cli.py' 2026-10-29T04:40:10,877 adding 'orfdata/record_sources.py' 2026-10-29T04:40:10,879 adding 'orfdata/reference.py' 2026-10-29T04:40:10,881 adding 'orfdata/reference_ledger.py' 2026-10-29T04:40:10,883 adding 'orfdata/reference_mapping.py' 2026-10-29T04:40:10,885 adding 'orfdata/reference_table.py' 2026-10-29T04:40:10,887 adding 'orfdata/refseq.py' 2026-10-29T04:40:10,889 adding 'orfdata/rna.py' 2026-10-29T04:40:10,891 adding 'orfdata/search_reference.py' 2026-10-29T04:40:10,894 adding 'orfdata/sequence.py' 2026-10-29T04:40:10,895 adding 'orfdata/version.py' 2026-10-29T04:40:10,898 adding 'orfdata/viral.py' 2026-10-29T04:40:10,903 adding 'orfdata/viral_annotation.py' 2026-10-29T04:40:10,906 adding 'orfdata/viral_cli.py' 2026-10-29T04:40:10,909 adding 'orfdata/viral_coverage.py' 2026-10-29T04:40:10,920 adding 'orfdata/viral_panel.py' 2026-10-29T04:40:10,925 adding 'orfdata/viral_registry.py' 2026-10-29T04:40:10,927 adding 'orfdata/viral_subsets.py' 2026-10-29T04:40:10,933 adding 'orfdata/data/catalogs.json' 2026-10-29T04:40:10,935 adding 'orfdata/data/chains.json' 2026-10-29T04:40:10,950 adding 'orfdata/data/datasets.json' 2026-10-29T04:40:10,954 adding 'orfdata/data/genomes.json' 2026-10-29T04:40:10,959 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-29T04:40:10,962 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-29T04:40:10,964 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-29T04:40:11,130 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-29T04:40:11,139 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-29T04:40:11,141 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-29T04:40:11,142 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-29T04:40:11,222 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-29T04:40:11,228 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-29T04:40:11,231 adding 'orfdata/data/viral/NOTICE.md' 2026-10-29T04:40:11,233 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv' 2026-10-29T04:40:11,238 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv' 2026-10-29T04:40:11,243 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv' 2026-10-29T04:40:11,245 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-29T04:40:11,246 adding 'orfdata/data/viral/subsets.yaml' 2026-10-29T04:40:11,248 adding 'orfdata/sources/__init__.py' 2026-10-29T04:40:11,251 adding 'orfdata/sources/copy.py' 2026-10-29T04:40:11,253 adding 'orfdata/sources/ingolia.py' 2026-10-29T04:40:11,256 adding 'orfdata/sources/kaabinejadian.py' 2026-10-29T04:40:11,257 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-29T04:40:11,259 adding 'orfdata/sources/openprot.py' 2026-10-29T04:40:11,262 adding 'orfdata/sources/peptideatlas.py' 2026-10-29T04:40:11,264 adding 'orfdata/sources/pfizer.py' 2026-10-29T04:40:11,267 adding 'orfdata/sources/pfizer_attribution.py' 2026-10-29T04:40:11,270 adding 'orfdata/sources/pfizer_dataset.py' 2026-10-29T04:40:11,271 adding 'orfdata/sources/pfizer_definitions.py' 2026-10-29T04:40:11,274 adding 'orfdata/sources/pfizer_evidence.py' 2026-10-29T04:40:11,276 adding 'orfdata/sources/pfizer_lineage.py' 2026-10-29T04:40:11,278 adding 'orfdata/sources/pfizer_native.py' 2026-10-29T04:40:11,281 adding 'orfdata/sources/pfizer_queries.py' 2026-10-29T04:40:11,283 adding 'orfdata/sources/pfizer_rna.py' 2026-10-29T04:40:11,285 adding 'orfdata/sources/pfizer_vendor.py' 2026-10-29T04:40:11,288 adding 'orfdata/sources/riborf.py' 2026-10-29T04:40:11,291 adding 'orfdata/sources/wang.py' 2026-10-29T04:40:11,295 adding 'orfdata-0.42.1.dist-info/licenses/LICENSE' 2026-10-29T04:40:11,297 adding 'orfdata-0.42.1.dist-info/METADATA' 2026-10-29T04:40:11,298 adding 'orfdata-0.42.1.dist-info/WHEEL' 2026-10-29T04:40:11,299 adding 'orfdata-0.42.1.dist-info/entry_points.txt' 2026-10-29T04:40:11,300 adding 'orfdata-0.42.1.dist-info/top_level.txt' 2026-10-29T04:40:11,302 adding 'orfdata-0.42.1.dist-info/RECORD' 2026-10-29T04:40:11,328 removing build/bdist.linux-armv7l/wheel 2026-10-29T04:40:11,451 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-29T04:40:11,505 Created wheel for orfdata: filename=orfdata-0.42.1-py3-none-any.whl size=2282762 sha256=727b940ebac634e90a9ecc8bec65c9a1385695d99381f26946a1e41289b64fe3 2026-10-29T04:40:11,507 Stored in directory: /tmp/pip-ephem-wheel-cache-rlcvn9tw/wheels/1a/59/25/6f89ff01e36fbae4aec25202193f8daf9f43f5f0b95d66fffd 2026-10-29T04:40:11,522 Successfully built orfdata 2026-10-29T04:40:11,577 Removed build tracker: '/tmp/pip-build-tracker-bc70gtie'