2026-11-02T18:15:01,179 Created temporary directory: /tmp/pip-ephem-wheel-cache-ewux8no9 2026-11-02T18:15:01,181 Created temporary directory: /tmp/pip-build-tracker-dnmj9lnu 2026-11-02T18:15:01,182 Initialized build tracking at /tmp/pip-build-tracker-dnmj9lnu 2026-11-02T18:15:01,182 Created build tracker: /tmp/pip-build-tracker-dnmj9lnu 2026-11-02T18:15:01,183 Entered build tracker: /tmp/pip-build-tracker-dnmj9lnu 2026-11-02T18:15:01,183 Created temporary directory: /tmp/pip-wheel-nyd6sjmh 2026-11-02T18:15:01,186 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-11-02T18:15:01,189 Created temporary directory: /tmp/pip-ephem-wheel-cache-agk2purg 2026-11-02T18:15:01,210 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-11-02T18:15:01,214 2 location(s) to search for versions of orfdata: 2026-11-02T18:15:01,214 * https://pypi.org/simple/orfdata/ 2026-11-02T18:15:01,214 * https://www.piwheels.org/simple/orfdata/ 2026-11-02T18:15:01,215 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-11-02T18:15:01,215 Getting page https://pypi.org/simple/orfdata/ 2026-11-02T18:15:01,217 Found index url https://pypi.org/simple 2026-11-02T18:15:01,370 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-11-02T18:15:01,388 Skipping link: No binaries permitted for orfdata: 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https://www.piwheels.org/simple/orfdata/orfdata-0.15.0-py3-none-any.whl#sha256=a9113b3c811c14080fccc262fc7d3129428b0c5e493aacd5ff2a9c564aefbd5c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,702 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.14.0-py3-none-any.whl#sha256=68a02237b184e2eb712854f94f1a3e121e1cffe3c76378bbc33a0ee2049c1f89 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,703 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.13.0-py3-none-any.whl#sha256=708d789cb7f01da911c1fcb53fc613a51d08978dba516bfcf4facd40875c8520 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,704 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.12.0-py3-none-any.whl#sha256=3e780f6c92764092934f43d9e3bc69497fef3e5ed3b471e2dd9efb7468471787 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,704 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.11.0-py3-none-any.whl#sha256=ec7e6439aa6f450087fa88dd9e2e23d3a5ef83a772401622b95d910a4a1f029c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,705 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.10.0-py3-none-any.whl#sha256=65db21afdb89bc160b14dba56ee80f94a39ea9c448105c0d5255a1460cb50256 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,705 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.9.0-py3-none-any.whl#sha256=2830e8180c3401f1e765abeab2337101a052975afe794ac64c4824ac87b56f16 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,706 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.8.0-py3-none-any.whl#sha256=f3179a493af31d4bfa6ddbba319a30631c3d3e44a0fad13631528b545e3f80cb (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,707 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.7.0-py3-none-any.whl#sha256=9e751a35c69a35be7da570127ffc072ffc3c4ed9b5c2fd0005229d8e7a77c704 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,707 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.6.0-py3-none-any.whl#sha256=b3d9297d24bbed1ee31bdea06ffa1384d9b682a77f0f67b16f7daa70aeb00fa0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,708 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,708 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,709 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,709 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,710 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-02T18:15:01,710 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-11-02T18:15:01,711 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-11-02T18:15:01,735 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-11-02T18:15:01,753 Collecting orfdata==0.42.3 2026-11-02T18:15:01,755 Created temporary directory: /tmp/pip-unpack-xovl4dcq 2026-11-02T18:15:02,001 Downloading orfdata-0.42.3.tar.gz (3.7 MB) 2026-11-02T18:15:03,524 Added orfdata==0.42.3 from https://files.pythonhosted.org/packages/c2/4c/c50241a0aa012836c048f08b30d7968b6bb896b9da91a877d7c39aa9cb67/orfdata-0.42.3.tar.gz to build tracker '/tmp/pip-build-tracker-dnmj9lnu' 2026-11-02T18:15:03,530 Created temporary directory: /tmp/pip-build-env-2avm16zc 2026-11-02T18:15:03,534 Installing build dependencies: started 2026-11-02T18:15:03,536 Running command pip subprocess to install build dependencies 2026-11-02T18:15:04,654 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-11-02T18:15:05,083 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-11-02T18:15:05,105 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-11-02T18:15:06,905 Collecting setuptools>=77 2026-11-02T18:15:06,906 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata 2026-11-02T18:15:06,930 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB) 2026-11-02T18:15:07,173 Collecting wheel 2026-11-02T18:15:07,174 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-11-02T18:15:07,189 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-11-02T18:15:07,375 Collecting packaging>=24.0 2026-11-02T18:15:07,376 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-11-02T18:15:07,395 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-11-02T18:15:07,588 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-11-02T18:15:07,612 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-11-02T18:15:07,688 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-11-02T18:15:07,724 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-11-02T18:15:07,753 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-11-02T18:15:07,828 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-11-02T18:15:10,643 Installing collected packages: setuptools, packaging, wheel 2026-11-02T18:15:13,868 Creating /tmp/pip-build-env-2avm16zc/overlay/local/bin 2026-11-02T18:15:13,870 changing mode of /tmp/pip-build-env-2avm16zc/overlay/local/bin/wheel to 755 2026-11-02T18:15:13,891 Successfully installed packaging-26.3 setuptools-84.2.1 wheel-0.48.0 2026-11-02T18:15:14,175 Installing build dependencies: finished with status 'done' 2026-11-02T18:15:14,182 Getting requirements to build wheel: started 2026-11-02T18:15:14,183 Running command Getting requirements to build wheel 2026-11-02T18:15:14,910 running egg_info 2026-11-02T18:15:14,915 writing orfdata.egg-info/PKG-INFO 2026-11-02T18:15:14,922 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-11-02T18:15:14,924 writing entry points to orfdata.egg-info/entry_points.txt 2026-11-02T18:15:14,928 writing requirements to orfdata.egg-info/requires.txt 2026-11-02T18:15:14,929 writing top-level names to orfdata.egg-info/top_level.txt 2026-11-02T18:15:14,962 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-02T18:15:14,983 reading manifest template 'MANIFEST.in' 2026-11-02T18:15:15,601 adding license file 'LICENSE' 2026-11-02T18:15:15,620 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-02T18:15:15,719 Getting requirements to build wheel: finished with status 'done' 2026-11-02T18:15:15,722 Created temporary directory: /tmp/pip-modern-metadata-li1xfpo8 2026-11-02T18:15:15,725 Preparing metadata (pyproject.toml): started 2026-11-02T18:15:15,726 Running command Preparing metadata (pyproject.toml) 2026-11-02T18:15:16,385 running dist_info 2026-11-02T18:15:16,396 creating /tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info 2026-11-02T18:15:16,397 writing /tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info/PKG-INFO 2026-11-02T18:15:16,404 writing dependency_links to /tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info/dependency_links.txt 2026-11-02T18:15:16,406 writing entry points to /tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info/entry_points.txt 2026-11-02T18:15:16,410 writing requirements to /tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info/requires.txt 2026-11-02T18:15:16,411 writing top-level names to /tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info/top_level.txt 2026-11-02T18:15:16,414 writing manifest file '/tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info/SOURCES.txt' 2026-11-02T18:15:16,445 reading manifest file '/tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info/SOURCES.txt' 2026-11-02T18:15:16,446 reading manifest template 'MANIFEST.in' 2026-11-02T18:15:17,031 adding license file 'LICENSE' 2026-11-02T18:15:17,046 writing manifest file '/tmp/pip-modern-metadata-li1xfpo8/orfdata.egg-info/SOURCES.txt' 2026-11-02T18:15:17,048 creating '/tmp/pip-modern-metadata-li1xfpo8/orfdata-0.42.3.dist-info' 2026-11-02T18:15:17,175 Preparing metadata (pyproject.toml): finished with status 'done' 2026-11-02T18:15:17,181 Source in /tmp/pip-wheel-nyd6sjmh/orfdata_7c0aa1e5ccfc49d58cee511d2d4f17a3 has version 0.42.3, which satisfies requirement orfdata==0.42.3 from https://files.pythonhosted.org/packages/c2/4c/c50241a0aa012836c048f08b30d7968b6bb896b9da91a877d7c39aa9cb67/orfdata-0.42.3.tar.gz 2026-11-02T18:15:17,182 Removed orfdata==0.42.3 from https://files.pythonhosted.org/packages/c2/4c/c50241a0aa012836c048f08b30d7968b6bb896b9da91a877d7c39aa9cb67/orfdata-0.42.3.tar.gz from build tracker '/tmp/pip-build-tracker-dnmj9lnu' 2026-11-02T18:15:17,188 Created temporary directory: /tmp/pip-unpack-bdj3vaxt 2026-11-02T18:15:17,189 Building wheels for collected packages: orfdata 2026-11-02T18:15:17,194 Created temporary directory: /tmp/pip-wheel-u3dwvvy8 2026-11-02T18:15:17,194 Destination directory: /tmp/pip-wheel-u3dwvvy8 2026-11-02T18:15:17,196 Building wheel for orfdata (pyproject.toml): started 2026-11-02T18:15:17,198 Running command Building wheel for orfdata (pyproject.toml) 2026-11-02T18:15:17,845 running bdist_wheel 2026-11-02T18:15:17,863 running build 2026-11-02T18:15:17,863 running build_py 2026-11-02T18:15:17,870 creating build/lib/orfdata 2026-11-02T18:15:17,872 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-11-02T18:15:17,875 copying orfdata/record_sources.py -> build/lib/orfdata 2026-11-02T18:15:17,878 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-11-02T18:15:17,880 copying orfdata/reference_table.py -> build/lib/orfdata 2026-11-02T18:15:17,882 copying orfdata/genbank.py -> build/lib/orfdata 2026-11-02T18:15:17,884 copying orfdata/reference.py -> build/lib/orfdata 2026-11-02T18:15:17,887 copying orfdata/proteome.py -> build/lib/orfdata 2026-11-02T18:15:17,891 copying orfdata/__init__.py -> build/lib/orfdata 2026-11-02T18:15:17,893 copying orfdata/numeric_vector.py -> build/lib/orfdata 2026-11-02T18:15:17,895 copying orfdata/viral_annotation.py -> build/lib/orfdata 2026-11-02T18:15:17,898 copying orfdata/datasets.py -> build/lib/orfdata 2026-11-02T18:15:17,900 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-11-02T18:15:17,902 copying orfdata/sequence.py -> build/lib/orfdata 2026-11-02T18:15:17,905 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-11-02T18:15:17,907 copying orfdata/gtf.py -> build/lib/orfdata 2026-11-02T18:15:17,909 copying orfdata/liftover.py -> build/lib/orfdata 2026-11-02T18:15:17,912 copying orfdata/net.py -> build/lib/orfdata 2026-11-02T18:15:17,914 copying orfdata/build.py -> build/lib/orfdata 2026-11-02T18:15:17,916 copying orfdata/data_resources.py -> build/lib/orfdata 2026-11-02T18:15:17,919 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-11-02T18:15:17,921 copying orfdata/cli.py -> build/lib/orfdata 2026-11-02T18:15:17,923 copying orfdata/cli_output.py -> build/lib/orfdata 2026-11-02T18:15:17,925 copying orfdata/version.py -> build/lib/orfdata 2026-11-02T18:15:17,927 copying orfdata/search_reference.py -> build/lib/orfdata 2026-11-02T18:15:17,929 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-11-02T18:15:17,931 copying orfdata/viral_panel.py -> build/lib/orfdata 2026-11-02T18:15:17,934 copying orfdata/install.py -> build/lib/orfdata 2026-11-02T18:15:17,936 copying orfdata/evidence.py -> build/lib/orfdata 2026-11-02T18:15:17,939 copying orfdata/genomes.py -> build/lib/orfdata 2026-11-02T18:15:17,941 copying orfdata/catalog.py -> build/lib/orfdata 2026-11-02T18:15:17,945 copying orfdata/rna.py -> build/lib/orfdata 2026-11-02T18:15:17,947 copying orfdata/refseq.py -> build/lib/orfdata 2026-11-02T18:15:17,949 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-11-02T18:15:17,951 copying orfdata/viral_coverage.py -> build/lib/orfdata 2026-11-02T18:15:17,954 copying orfdata/measurements.py -> build/lib/orfdata 2026-11-02T18:15:17,956 copying orfdata/pairing.py -> build/lib/orfdata 2026-11-02T18:15:17,959 copying orfdata/downloads.py -> build/lib/orfdata 2026-11-02T18:15:17,961 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-11-02T18:15:17,964 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-11-02T18:15:17,966 copying orfdata/artifact_archives.py -> build/lib/orfdata 2026-11-02T18:15:17,968 copying orfdata/viral_cli.py -> build/lib/orfdata 2026-11-02T18:15:17,970 copying orfdata/_structure.py -> build/lib/orfdata 2026-11-02T18:15:17,972 copying orfdata/reference_ledger.py -> build/lib/orfdata 2026-11-02T18:15:17,975 copying orfdata/dataset.py -> build/lib/orfdata 2026-11-02T18:15:17,978 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-11-02T18:15:17,980 copying orfdata/viral.py -> build/lib/orfdata 2026-11-02T18:15:17,983 copying orfdata/download_cli.py -> build/lib/orfdata 2026-11-02T18:15:17,985 copying orfdata/viral_subsets.py -> build/lib/orfdata 2026-11-02T18:15:17,988 copying orfdata/catalogs.py -> build/lib/orfdata 2026-11-02T18:15:17,990 copying orfdata/fasta.py -> build/lib/orfdata 2026-11-02T18:15:17,992 copying orfdata/model.py -> build/lib/orfdata 2026-11-02T18:15:17,995 copying orfdata/viral_registry.py -> build/lib/orfdata 2026-11-02T18:15:17,999 creating build/lib/orfdata/sources 2026-11-02T18:15:18,000 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,002 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,004 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,006 copying orfdata/sources/pfizer_definitions.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,008 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,011 copying orfdata/sources/pfizer_evidence.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,013 copying orfdata/sources/pfizer_vendor.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,015 copying orfdata/sources/pfizer_queries.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,018 copying orfdata/sources/pfizer_dataset.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,021 copying orfdata/sources/pfizer_lineage.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,023 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,026 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,028 copying orfdata/sources/mammary_stroma.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,031 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,033 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,036 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,039 copying orfdata/sources/pfizer_attribution.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,041 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,044 copying orfdata/sources/pfizer_native.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,046 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-11-02T18:15:18,050 running egg_info 2026-11-02T18:15:18,059 writing orfdata.egg-info/PKG-INFO 2026-11-02T18:15:18,066 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-11-02T18:15:18,068 writing entry points to orfdata.egg-info/entry_points.txt 2026-11-02T18:15:18,071 writing requirements to orfdata.egg-info/requires.txt 2026-11-02T18:15:18,072 writing top-level names to orfdata.egg-info/top_level.txt 2026-11-02T18:15:18,093 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-02T18:15:18,114 reading manifest template 'MANIFEST.in' 2026-11-02T18:15:18,692 adding license file 'LICENSE' 2026-11-02T18:15:18,711 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-02T18:15:18,729 creating build/lib/orfdata/data/uorf-evidence 2026-11-02T18:15:18,731 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-11-02T18:15:18,745 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-11-02T18:15:18,747 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-11-02T18:15:18,749 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-11-02T18:15:18,752 creating build/lib/orfdata/data/orf-evidence 2026-11-02T18:15:18,753 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-11-02T18:15:18,781 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-11-02T18:15:18,783 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-11-02T18:15:18,785 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-11-02T18:15:18,787 creating build/lib/orfdata/data/ires 2026-11-02T18:15:18,788 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-11-02T18:15:18,791 creating build/lib/orfdata/data/viral 2026-11-02T18:15:18,792 copying orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/lib/orfdata/data/viral 2026-11-02T18:15:18,794 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-11-02T18:15:18,797 copying orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/lib/orfdata/data/viral 2026-11-02T18:15:18,801 copying orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/lib/orfdata/data/viral 2026-11-02T18:15:18,804 copying orfdata/data/viral/subsets.yaml -> build/lib/orfdata/data/viral 2026-11-02T18:15:18,807 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-11-02T18:15:18,810 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-11-02T18:15:18,816 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-11-02T18:15:18,820 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-11-02T18:15:18,823 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-11-02T18:15:18,846 installing to build/bdist.linux-armv7l/wheel 2026-11-02T18:15:18,846 running install 2026-11-02T18:15:18,869 running install_lib 2026-11-02T18:15:18,875 creating build/bdist.linux-armv7l/wheel 2026-11-02T18:15:18,878 creating build/bdist.linux-armv7l/wheel/orfdata 2026-11-02T18:15:18,879 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,882 copying build/lib/orfdata/record_sources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,884 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,886 copying build/lib/orfdata/reference_table.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,888 copying build/lib/orfdata/genbank.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,891 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,893 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,899 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,901 copying build/lib/orfdata/numeric_vector.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,902 copying build/lib/orfdata/viral_annotation.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,905 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,907 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,910 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,912 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:18,915 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-11-02T18:15:18,916 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-02T18:15:18,922 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-11-02T18:15:18,923 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-11-02T18:15:18,926 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-11-02T18:15:18,927 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-02T18:15:18,930 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-02T18:15:18,932 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-02T18:15:18,935 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-02T18:15:18,937 copying build/lib/orfdata/data/viral/subsets.yaml -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-02T18:15:18,939 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-02T18:15:18,941 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-02T18:15:18,944 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-11-02T18:15:18,945 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-02T18:15:18,958 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-02T18:15:18,960 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-02T18:15:18,962 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-02T18:15:18,964 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-02T18:15:18,968 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-11-02T18:15:18,969 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-02T18:15:18,992 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-02T18:15:18,994 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-02T18:15:18,996 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-02T18:15:18,998 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-02T18:15:18,999 copying build/lib/orfdata/gtf.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,002 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-11-02T18:15:19,003 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,006 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,008 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,010 copying build/lib/orfdata/sources/pfizer_definitions.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,013 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,015 copying build/lib/orfdata/sources/pfizer_evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,017 copying build/lib/orfdata/sources/pfizer_vendor.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,020 copying build/lib/orfdata/sources/pfizer_queries.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,022 copying build/lib/orfdata/sources/pfizer_dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,025 copying build/lib/orfdata/sources/pfizer_lineage.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,027 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,030 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,033 copying build/lib/orfdata/sources/mammary_stroma.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,035 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,037 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,040 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,042 copying build/lib/orfdata/sources/pfizer_attribution.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,045 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,047 copying build/lib/orfdata/sources/pfizer_native.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,050 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-02T18:15:19,052 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,055 copying build/lib/orfdata/net.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,057 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,060 copying build/lib/orfdata/data_resources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,062 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,064 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,066 copying build/lib/orfdata/cli_output.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,068 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,070 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,072 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,074 copying build/lib/orfdata/viral_panel.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,077 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,079 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,082 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,084 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,087 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,089 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,092 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,094 copying build/lib/orfdata/viral_coverage.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,096 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,099 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,101 copying build/lib/orfdata/downloads.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,103 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,106 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,108 copying build/lib/orfdata/artifact_archives.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,110 copying build/lib/orfdata/viral_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,113 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,115 copying build/lib/orfdata/reference_ledger.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,117 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,120 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,122 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,125 copying build/lib/orfdata/download_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,127 copying build/lib/orfdata/viral_subsets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,129 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,132 copying build/lib/orfdata/fasta.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,133 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,136 copying build/lib/orfdata/viral_registry.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-02T18:15:19,138 running install_egg_info 2026-11-02T18:15:19,143 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.42.3-py3.11.egg-info 2026-11-02T18:15:19,155 running install_scripts 2026-11-02T18:15:19,168 creating build/bdist.linux-armv7l/wheel/orfdata-0.42.3.dist-info/WHEEL 2026-11-02T18:15:19,171 creating '/tmp/pip-wheel-u3dwvvy8/.tmp-np2lyd3j/orfdata-0.42.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-11-02T18:15:19,174 adding 'orfdata/__init__.py' 2026-11-02T18:15:19,175 adding 'orfdata/_pinned_genome.py' 2026-11-02T18:15:19,177 adding 'orfdata/_structure.py' 2026-11-02T18:15:19,179 adding 'orfdata/artifact_archives.py' 2026-11-02T18:15:19,182 adding 'orfdata/build.py' 2026-11-02T18:15:19,192 adding 'orfdata/catalog.py' 2026-11-02T18:15:19,194 adding 'orfdata/catalog_cli.py' 2026-11-02T18:15:19,196 adding 'orfdata/catalog_manifest.py' 2026-11-02T18:15:19,198 adding 'orfdata/catalogs.py' 2026-11-02T18:15:19,200 adding 'orfdata/cli.py' 2026-11-02T18:15:19,202 adding 'orfdata/cli_output.py' 2026-11-02T18:15:19,203 adding 'orfdata/data_resources.py' 2026-11-02T18:15:19,208 adding 'orfdata/dataset.py' 2026-11-02T18:15:19,210 adding 'orfdata/dataset_cli.py' 2026-11-02T18:15:19,213 adding 'orfdata/datasets.py' 2026-11-02T18:15:19,215 adding 'orfdata/download_cli.py' 2026-11-02T18:15:19,217 adding 'orfdata/downloads.py' 2026-11-02T18:15:19,219 adding 'orfdata/evidence.py' 2026-11-02T18:15:19,221 adding 'orfdata/evidence_summary.py' 2026-11-02T18:15:19,222 adding 'orfdata/fasta.py' 2026-11-02T18:15:19,224 adding 'orfdata/genbank.py' 2026-11-02T18:15:19,226 adding 'orfdata/genomes.py' 2026-11-02T18:15:19,227 adding 'orfdata/genomes_cli.py' 2026-11-02T18:15:19,229 adding 'orfdata/gtf.py' 2026-11-02T18:15:19,231 adding 'orfdata/initiation_context.py' 2026-11-02T18:15:19,233 adding 'orfdata/install.py' 2026-11-02T18:15:19,236 adding 'orfdata/liftover.py' 2026-11-02T18:15:19,238 adding 'orfdata/liftover_cli.py' 2026-11-02T18:15:19,241 adding 'orfdata/measurements.py' 2026-11-02T18:15:19,247 adding 'orfdata/model.py' 2026-11-02T18:15:19,249 adding 'orfdata/net.py' 2026-11-02T18:15:19,251 adding 'orfdata/numeric_vector.py' 2026-11-02T18:15:19,253 adding 'orfdata/pairing.py' 2026-11-02T18:15:19,270 adding 'orfdata/proteome.py' 2026-11-02T18:15:19,272 adding 'orfdata/proteome_cli.py' 2026-11-02T18:15:19,274 adding 'orfdata/record_sources.py' 2026-11-02T18:15:19,277 adding 'orfdata/reference.py' 2026-11-02T18:15:19,279 adding 'orfdata/reference_ledger.py' 2026-11-02T18:15:19,281 adding 'orfdata/reference_mapping.py' 2026-11-02T18:15:19,282 adding 'orfdata/reference_table.py' 2026-11-02T18:15:19,284 adding 'orfdata/refseq.py' 2026-11-02T18:15:19,286 adding 'orfdata/rna.py' 2026-11-02T18:15:19,289 adding 'orfdata/search_reference.py' 2026-11-02T18:15:19,290 adding 'orfdata/sequence.py' 2026-11-02T18:15:19,292 adding 'orfdata/version.py' 2026-11-02T18:15:19,293 adding 'orfdata/viral.py' 2026-11-02T18:15:19,297 adding 'orfdata/viral_annotation.py' 2026-11-02T18:15:19,299 adding 'orfdata/viral_cli.py' 2026-11-02T18:15:19,301 adding 'orfdata/viral_coverage.py' 2026-11-02T18:15:19,308 adding 'orfdata/viral_panel.py' 2026-11-02T18:15:19,311 adding 'orfdata/viral_registry.py' 2026-11-02T18:15:19,312 adding 'orfdata/viral_subsets.py' 2026-11-02T18:15:19,316 adding 'orfdata/data/catalogs.json' 2026-11-02T18:15:19,318 adding 'orfdata/data/chains.json' 2026-11-02T18:15:19,328 adding 'orfdata/data/datasets.json' 2026-11-02T18:15:19,330 adding 'orfdata/data/genomes.json' 2026-11-02T18:15:19,333 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-11-02T18:15:19,335 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-11-02T18:15:19,337 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-11-02T18:15:19,491 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-11-02T18:15:19,501 adding 'orfdata/data/orf-evidence/manifest.json' 2026-11-02T18:15:19,502 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-11-02T18:15:19,504 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-11-02T18:15:19,583 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-11-02T18:15:19,589 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-11-02T18:15:19,592 adding 'orfdata/data/viral/NOTICE.md' 2026-11-02T18:15:19,594 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv' 2026-11-02T18:15:19,599 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv' 2026-11-02T18:15:19,604 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv' 2026-11-02T18:15:19,606 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-11-02T18:15:19,607 adding 'orfdata/data/viral/subsets.yaml' 2026-11-02T18:15:19,609 adding 'orfdata/sources/__init__.py' 2026-11-02T18:15:19,612 adding 'orfdata/sources/copy.py' 2026-11-02T18:15:19,614 adding 'orfdata/sources/ingolia.py' 2026-11-02T18:15:19,617 adding 'orfdata/sources/kaabinejadian.py' 2026-11-02T18:15:19,620 adding 'orfdata/sources/mammary_stroma.py' 2026-11-02T18:15:19,622 adding 'orfdata/sources/ncorf_mammals.py' 2026-11-02T18:15:19,624 adding 'orfdata/sources/openprot.py' 2026-11-02T18:15:19,626 adding 'orfdata/sources/peptideatlas.py' 2026-11-02T18:15:19,628 adding 'orfdata/sources/pfizer.py' 2026-11-02T18:15:19,631 adding 'orfdata/sources/pfizer_attribution.py' 2026-11-02T18:15:19,634 adding 'orfdata/sources/pfizer_dataset.py' 2026-11-02T18:15:19,635 adding 'orfdata/sources/pfizer_definitions.py' 2026-11-02T18:15:19,638 adding 'orfdata/sources/pfizer_evidence.py' 2026-11-02T18:15:19,640 adding 'orfdata/sources/pfizer_lineage.py' 2026-11-02T18:15:19,642 adding 'orfdata/sources/pfizer_native.py' 2026-11-02T18:15:19,645 adding 'orfdata/sources/pfizer_queries.py' 2026-11-02T18:15:19,647 adding 'orfdata/sources/pfizer_rna.py' 2026-11-02T18:15:19,649 adding 'orfdata/sources/pfizer_vendor.py' 2026-11-02T18:15:19,652 adding 'orfdata/sources/riborf.py' 2026-11-02T18:15:19,655 adding 'orfdata/sources/wang.py' 2026-11-02T18:15:19,659 adding 'orfdata-0.42.3.dist-info/licenses/LICENSE' 2026-11-02T18:15:19,661 adding 'orfdata-0.42.3.dist-info/METADATA' 2026-11-02T18:15:19,662 adding 'orfdata-0.42.3.dist-info/WHEEL' 2026-11-02T18:15:19,663 adding 'orfdata-0.42.3.dist-info/entry_points.txt' 2026-11-02T18:15:19,664 adding 'orfdata-0.42.3.dist-info/top_level.txt' 2026-11-02T18:15:19,666 adding 'orfdata-0.42.3.dist-info/RECORD' 2026-11-02T18:15:19,692 removing build/bdist.linux-armv7l/wheel 2026-11-02T18:15:19,816 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-11-02T18:15:19,865 Created wheel for orfdata: filename=orfdata-0.42.3-py3-none-any.whl size=2291657 sha256=2dea5f88c47ffd26afca56d0bba17314ddf1755ef76e360a59ac29deff96e9f9 2026-11-02T18:15:19,866 Stored in directory: /tmp/pip-ephem-wheel-cache-agk2purg/wheels/42/83/b9/31109939f5a9cb18fa87f1ebe9ab952922afde11860426772c 2026-11-02T18:15:19,884 Successfully built orfdata 2026-11-02T18:15:19,941 Removed build tracker: '/tmp/pip-build-tracker-dnmj9lnu'