2026-11-11T00:53:40,301 Created temporary directory: /tmp/pip-ephem-wheel-cache-uwo2cix7 2026-11-11T00:53:40,303 Created temporary directory: /tmp/pip-build-tracker-17ch5xiy 2026-11-11T00:53:40,303 Initialized build tracking at /tmp/pip-build-tracker-17ch5xiy 2026-11-11T00:53:40,304 Created build tracker: /tmp/pip-build-tracker-17ch5xiy 2026-11-11T00:53:40,304 Entered build tracker: /tmp/pip-build-tracker-17ch5xiy 2026-11-11T00:53:40,305 Created temporary directory: /tmp/pip-wheel-zla5r9jp 2026-11-11T00:53:40,308 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-11-11T00:53:40,310 Created temporary directory: /tmp/pip-ephem-wheel-cache-rkp_2bwb 2026-11-11T00:53:40,332 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-11-11T00:53:40,335 2 location(s) to search for versions of orfdata: 2026-11-11T00:53:40,335 * https://pypi.org/simple/orfdata/ 2026-11-11T00:53:40,335 * https://www.piwheels.org/simple/orfdata/ 2026-11-11T00:53:40,336 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-11-11T00:53:40,337 Getting page https://pypi.org/simple/orfdata/ 2026-11-11T00:53:40,338 Found index url https://pypi.org/simple 2026-11-11T00:53:40,658 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-11-11T00:53:40,680 Skipping link: No binaries permitted for orfdata: 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https://archive1.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-11T00:53:41,064 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-11-11T00:53:41,065 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-11-11T00:53:41,092 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-11-11T00:53:41,111 Collecting orfdata==0.47.0 2026-11-11T00:53:41,113 Created temporary directory: /tmp/pip-unpack-wqvrsom1 2026-11-11T00:53:41,356 Downloading orfdata-0.47.0.tar.gz (3.8 MB) 2026-11-11T00:53:43,284 Added orfdata==0.47.0 from https://files.pythonhosted.org/packages/bd/ba/19a5121b76f8b475d5f56594a921087200c8b7b84b9aa47eb97c46adeb98/orfdata-0.47.0.tar.gz to build tracker '/tmp/pip-build-tracker-17ch5xiy' 2026-11-11T00:53:43,292 Created temporary directory: /tmp/pip-build-env-jdvr2z0r 2026-11-11T00:53:43,297 Installing build dependencies: started 2026-11-11T00:53:43,299 Running command pip subprocess to install build dependencies 2026-11-11T00:53:44,460 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-11-11T00:53:44,917 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-11-11T00:53:44,940 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-11-11T00:53:46,865 Collecting setuptools>=77 2026-11-11T00:53:46,866 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata 2026-11-11T00:53:46,885 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB) 2026-11-11T00:53:48,671 Collecting wheel 2026-11-11T00:53:48,672 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-11-11T00:53:48,695 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-11-11T00:53:50,556 Collecting packaging>=24.0 2026-11-11T00:53:50,557 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-11-11T00:53:50,573 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-11-11T00:53:52,410 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-11-11T00:53:52,468 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-11-11T00:53:52,568 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-11-11T00:53:54,293 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-11-11T00:53:54,348 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-11-11T00:53:55,851 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-11-11T00:53:58,674 Installing collected packages: setuptools, packaging, wheel 2026-11-11T00:54:01,448 Creating /tmp/pip-build-env-jdvr2z0r/overlay/local/bin 2026-11-11T00:54:01,450 changing mode of /tmp/pip-build-env-jdvr2z0r/overlay/local/bin/wheel to 755 2026-11-11T00:54:01,471 Successfully installed packaging-26.3 setuptools-84.2.1 wheel-0.48.0 2026-11-11T00:54:01,753 Installing build dependencies: finished with status 'done' 2026-11-11T00:54:01,759 Getting requirements to build wheel: started 2026-11-11T00:54:01,760 Running command Getting requirements to build wheel 2026-11-11T00:54:02,508 running egg_info 2026-11-11T00:54:02,514 writing orfdata.egg-info/PKG-INFO 2026-11-11T00:54:02,522 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-11-11T00:54:02,524 writing entry points to orfdata.egg-info/entry_points.txt 2026-11-11T00:54:02,528 writing requirements to orfdata.egg-info/requires.txt 2026-11-11T00:54:02,530 writing top-level names to orfdata.egg-info/top_level.txt 2026-11-11T00:54:02,566 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-11T00:54:02,589 reading manifest template 'MANIFEST.in' 2026-11-11T00:54:03,297 adding license file 'LICENSE' 2026-11-11T00:54:03,319 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-11T00:54:03,418 Getting requirements to build wheel: finished with status 'done' 2026-11-11T00:54:03,422 Created temporary directory: /tmp/pip-modern-metadata-l87jz7ps 2026-11-11T00:54:03,424 Preparing metadata (pyproject.toml): started 2026-11-11T00:54:03,425 Running command Preparing metadata (pyproject.toml) 2026-11-11T00:54:04,146 running dist_info 2026-11-11T00:54:04,157 creating /tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info 2026-11-11T00:54:04,158 writing /tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info/PKG-INFO 2026-11-11T00:54:04,165 writing dependency_links to /tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info/dependency_links.txt 2026-11-11T00:54:04,167 writing entry points to /tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info/entry_points.txt 2026-11-11T00:54:04,171 writing requirements to /tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info/requires.txt 2026-11-11T00:54:04,172 writing top-level names to /tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info/top_level.txt 2026-11-11T00:54:04,174 writing manifest file '/tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info/SOURCES.txt' 2026-11-11T00:54:04,207 reading manifest file '/tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info/SOURCES.txt' 2026-11-11T00:54:04,209 reading manifest template 'MANIFEST.in' 2026-11-11T00:54:04,953 adding license file 'LICENSE' 2026-11-11T00:54:04,969 writing manifest file '/tmp/pip-modern-metadata-l87jz7ps/orfdata.egg-info/SOURCES.txt' 2026-11-11T00:54:04,971 creating '/tmp/pip-modern-metadata-l87jz7ps/orfdata-0.47.0.dist-info' 2026-11-11T00:54:05,100 Preparing metadata (pyproject.toml): finished with status 'done' 2026-11-11T00:54:05,106 Source in /tmp/pip-wheel-zla5r9jp/orfdata_b0f543888b1444edbfffa773a81eedf7 has version 0.47.0, which satisfies requirement orfdata==0.47.0 from https://files.pythonhosted.org/packages/bd/ba/19a5121b76f8b475d5f56594a921087200c8b7b84b9aa47eb97c46adeb98/orfdata-0.47.0.tar.gz 2026-11-11T00:54:05,107 Removed orfdata==0.47.0 from https://files.pythonhosted.org/packages/bd/ba/19a5121b76f8b475d5f56594a921087200c8b7b84b9aa47eb97c46adeb98/orfdata-0.47.0.tar.gz from build tracker '/tmp/pip-build-tracker-17ch5xiy' 2026-11-11T00:54:05,113 Created temporary directory: /tmp/pip-unpack-a_n3funp 2026-11-11T00:54:05,114 Building wheels for collected packages: orfdata 2026-11-11T00:54:05,118 Created temporary directory: /tmp/pip-wheel-rxyvkesi 2026-11-11T00:54:05,119 Destination directory: /tmp/pip-wheel-rxyvkesi 2026-11-11T00:54:05,121 Building wheel for orfdata (pyproject.toml): started 2026-11-11T00:54:05,122 Running command Building wheel for orfdata (pyproject.toml) 2026-11-11T00:54:05,801 running bdist_wheel 2026-11-11T00:54:05,819 running build 2026-11-11T00:54:05,820 running build_py 2026-11-11T00:54:05,827 creating build/lib/orfdata 2026-11-11T00:54:05,829 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-11-11T00:54:05,832 copying orfdata/artifact_archives.py -> build/lib/orfdata 2026-11-11T00:54:05,834 copying orfdata/gtf.py -> build/lib/orfdata 2026-11-11T00:54:05,836 copying orfdata/_structure.py -> build/lib/orfdata 2026-11-11T00:54:05,838 copying orfdata/reference_table.py -> build/lib/orfdata 2026-11-11T00:54:05,841 copying orfdata/liftover.py -> build/lib/orfdata 2026-11-11T00:54:05,843 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-11-11T00:54:05,845 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-11-11T00:54:05,847 copying orfdata/proteome.py -> build/lib/orfdata 2026-11-11T00:54:05,852 copying orfdata/model.py -> build/lib/orfdata 2026-11-11T00:54:05,855 copying orfdata/dataset.py -> build/lib/orfdata 2026-11-11T00:54:05,857 copying orfdata/refseq.py -> build/lib/orfdata 2026-11-11T00:54:05,860 copying orfdata/download_cli.py -> build/lib/orfdata 2026-11-11T00:54:05,862 copying orfdata/reference.py -> build/lib/orfdata 2026-11-11T00:54:05,864 copying orfdata/search_reference.py -> build/lib/orfdata 2026-11-11T00:54:05,867 copying orfdata/pairing.py -> build/lib/orfdata 2026-11-11T00:54:05,869 copying orfdata/viral.py -> build/lib/orfdata 2026-11-11T00:54:05,872 copying orfdata/viral_panel.py -> build/lib/orfdata 2026-11-11T00:54:05,876 copying orfdata/build.py -> build/lib/orfdata 2026-11-11T00:54:05,879 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-11-11T00:54:05,881 copying orfdata/net.py -> build/lib/orfdata 2026-11-11T00:54:05,883 copying orfdata/genbank.py -> build/lib/orfdata 2026-11-11T00:54:05,885 copying orfdata/numeric_vector.py -> build/lib/orfdata 2026-11-11T00:54:05,887 copying orfdata/viral_cli.py -> build/lib/orfdata 2026-11-11T00:54:05,890 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-11-11T00:54:05,891 copying orfdata/errors.py -> build/lib/orfdata 2026-11-11T00:54:05,893 copying orfdata/catalogs.py -> build/lib/orfdata 2026-11-11T00:54:05,896 copying orfdata/catalog.py -> build/lib/orfdata 2026-11-11T00:54:05,899 copying orfdata/version.py -> build/lib/orfdata 2026-11-11T00:54:05,901 copying orfdata/measurements.py -> build/lib/orfdata 2026-11-11T00:54:05,904 copying orfdata/downloads.py -> build/lib/orfdata 2026-11-11T00:54:05,906 copying orfdata/datasets.py -> build/lib/orfdata 2026-11-11T00:54:05,909 copying orfdata/install.py -> build/lib/orfdata 2026-11-11T00:54:05,911 copying orfdata/ensembl.py -> build/lib/orfdata 2026-11-11T00:54:05,913 copying orfdata/viral_installed.py -> build/lib/orfdata 2026-11-11T00:54:05,916 copying orfdata/fasta.py -> build/lib/orfdata 2026-11-11T00:54:05,918 copying orfdata/cli_output.py -> build/lib/orfdata 2026-11-11T00:54:05,920 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-11-11T00:54:05,922 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-11-11T00:54:05,924 copying orfdata/genomes.py -> build/lib/orfdata 2026-11-11T00:54:05,926 copying orfdata/__init__.py -> build/lib/orfdata 2026-11-11T00:54:05,928 copying orfdata/evidence.py -> build/lib/orfdata 2026-11-11T00:54:05,931 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-11-11T00:54:05,933 copying orfdata/viral_registry.py -> build/lib/orfdata 2026-11-11T00:54:05,936 copying orfdata/data_resources.py -> build/lib/orfdata 2026-11-11T00:54:05,938 copying orfdata/rna.py -> build/lib/orfdata 2026-11-11T00:54:05,940 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-11-11T00:54:05,942 copying orfdata/viral_annotation.py -> build/lib/orfdata 2026-11-11T00:54:05,945 copying orfdata/viral_subsets.py -> build/lib/orfdata 2026-11-11T00:54:05,947 copying orfdata/sequence.py -> build/lib/orfdata 2026-11-11T00:54:05,949 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-11-11T00:54:05,952 copying orfdata/cli.py -> build/lib/orfdata 2026-11-11T00:54:05,954 copying orfdata/reference_ledger.py -> build/lib/orfdata 2026-11-11T00:54:05,956 copying orfdata/record_sources.py -> build/lib/orfdata 2026-11-11T00:54:05,959 copying orfdata/viral_coverage.py -> build/lib/orfdata 2026-11-11T00:54:05,961 copying orfdata/cli_parser.py -> build/lib/orfdata 2026-11-11T00:54:05,965 creating build/lib/orfdata/sources 2026-11-11T00:54:05,966 copying orfdata/sources/pfizer_definitions.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,968 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,970 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,972 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,975 copying orfdata/sources/pfizer_attribution.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,977 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,980 copying orfdata/sources/pfizer_queries.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,982 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,985 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,987 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,989 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,992 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,994 copying orfdata/sources/mammary_stroma.py -> build/lib/orfdata/sources 2026-11-11T00:54:05,997 copying orfdata/sources/pfizer_dataset.py -> build/lib/orfdata/sources 2026-11-11T00:54:06,000 copying orfdata/sources/pfizer_vendor.py -> build/lib/orfdata/sources 2026-11-11T00:54:06,002 copying orfdata/sources/pfizer_lineage.py -> build/lib/orfdata/sources 2026-11-11T00:54:06,005 copying orfdata/sources/pfizer_native.py -> build/lib/orfdata/sources 2026-11-11T00:54:06,007 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-11-11T00:54:06,009 copying orfdata/sources/pfizer_evidence.py -> build/lib/orfdata/sources 2026-11-11T00:54:06,011 copying orfdata/sources/riborf_native.py -> build/lib/orfdata/sources 2026-11-11T00:54:06,014 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-11-11T00:54:06,018 running egg_info 2026-11-11T00:54:06,028 writing orfdata.egg-info/PKG-INFO 2026-11-11T00:54:06,034 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-11-11T00:54:06,036 writing entry points to orfdata.egg-info/entry_points.txt 2026-11-11T00:54:06,039 writing requirements to orfdata.egg-info/requires.txt 2026-11-11T00:54:06,040 writing top-level names to orfdata.egg-info/top_level.txt 2026-11-11T00:54:06,062 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-11T00:54:06,084 reading manifest template 'MANIFEST.in' 2026-11-11T00:54:06,750 adding license file 'LICENSE' 2026-11-11T00:54:06,770 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-11T00:54:06,788 creating build/lib/orfdata/data/uorf-evidence 2026-11-11T00:54:06,789 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-11-11T00:54:06,792 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-11-11T00:54:06,794 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-11-11T00:54:06,796 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-11-11T00:54:06,810 creating build/lib/orfdata/data/orf-evidence 2026-11-11T00:54:06,811 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-11-11T00:54:06,813 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-11-11T00:54:06,815 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-11-11T00:54:06,818 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-11-11T00:54:06,839 creating build/lib/orfdata/data/ires 2026-11-11T00:54:06,840 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-11-11T00:54:06,843 creating build/lib/orfdata/data/viral 2026-11-11T00:54:06,844 copying orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/lib/orfdata/data/viral 2026-11-11T00:54:06,848 copying orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/lib/orfdata/data/viral 2026-11-11T00:54:06,851 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-11-11T00:54:06,854 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-11-11T00:54:06,856 copying orfdata/data/viral/subsets.yaml -> build/lib/orfdata/data/viral 2026-11-11T00:54:06,859 copying orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/lib/orfdata/data/viral 2026-11-11T00:54:06,862 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-11-11T00:54:06,867 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-11-11T00:54:06,871 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-11-11T00:54:06,874 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-11-11T00:54:06,897 installing to build/bdist.linux-armv7l/wheel 2026-11-11T00:54:06,897 running install 2026-11-11T00:54:06,919 running install_lib 2026-11-11T00:54:06,925 creating build/bdist.linux-armv7l/wheel 2026-11-11T00:54:06,928 creating build/bdist.linux-armv7l/wheel/orfdata 2026-11-11T00:54:06,930 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,932 copying build/lib/orfdata/artifact_archives.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,935 copying build/lib/orfdata/gtf.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,937 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,940 copying build/lib/orfdata/reference_table.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,942 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,945 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,948 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,950 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,955 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,958 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,962 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,964 copying build/lib/orfdata/download_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,967 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,970 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,972 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,975 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,978 copying build/lib/orfdata/viral_panel.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,982 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,985 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,987 copying build/lib/orfdata/net.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,990 copying build/lib/orfdata/genbank.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,993 copying build/lib/orfdata/numeric_vector.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,995 copying build/lib/orfdata/viral_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:06,998 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-11-11T00:54:07,000 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-11-11T00:54:07,002 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-11T00:54:07,005 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-11T00:54:07,008 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-11T00:54:07,011 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-11T00:54:07,013 copying build/lib/orfdata/data/viral/subsets.yaml -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-11T00:54:07,015 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-11T00:54:07,018 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-11T00:54:07,021 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-11-11T00:54:07,023 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-11-11T00:54:07,026 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-11-11T00:54:07,027 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-11T00:54:07,030 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-11T00:54:07,032 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-11T00:54:07,034 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-11T00:54:07,062 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-11T00:54:07,067 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-11-11T00:54:07,068 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-11T00:54:07,070 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-11T00:54:07,071 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-11T00:54:07,074 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-11T00:54:07,088 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-11T00:54:07,090 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-11T00:54:07,093 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,095 copying build/lib/orfdata/errors.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,097 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,099 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,102 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,104 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,107 copying build/lib/orfdata/downloads.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,109 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,112 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,115 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-11-11T00:54:07,116 copying build/lib/orfdata/sources/pfizer_definitions.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,118 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,121 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,123 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,125 copying build/lib/orfdata/sources/pfizer_attribution.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,127 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,129 copying build/lib/orfdata/sources/pfizer_queries.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,131 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,134 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,136 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,138 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,140 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,143 copying build/lib/orfdata/sources/mammary_stroma.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,145 copying build/lib/orfdata/sources/pfizer_dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,148 copying build/lib/orfdata/sources/pfizer_vendor.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,150 copying build/lib/orfdata/sources/pfizer_lineage.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,153 copying build/lib/orfdata/sources/pfizer_native.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,155 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,157 copying build/lib/orfdata/sources/pfizer_evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,159 copying build/lib/orfdata/sources/riborf_native.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,162 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-11T00:54:07,165 copying build/lib/orfdata/ensembl.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,167 copying build/lib/orfdata/viral_installed.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,169 copying build/lib/orfdata/fasta.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,171 copying build/lib/orfdata/cli_output.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,173 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,175 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,177 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,179 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,181 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,184 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,186 copying build/lib/orfdata/viral_registry.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,188 copying build/lib/orfdata/data_resources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,190 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,193 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,195 copying build/lib/orfdata/viral_annotation.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,197 copying build/lib/orfdata/viral_subsets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,199 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,201 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,203 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,206 copying build/lib/orfdata/reference_ledger.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,208 copying build/lib/orfdata/record_sources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,210 copying build/lib/orfdata/viral_coverage.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,212 copying build/lib/orfdata/cli_parser.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-11T00:54:07,214 running install_egg_info 2026-11-11T00:54:07,219 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.47.0-py3.11.egg-info 2026-11-11T00:54:07,230 running install_scripts 2026-11-11T00:54:07,242 creating build/bdist.linux-armv7l/wheel/orfdata-0.47.0.dist-info/WHEEL 2026-11-11T00:54:07,245 creating '/tmp/pip-wheel-rxyvkesi/.tmp-za9rssrc/orfdata-0.47.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-11-11T00:54:07,248 adding 'orfdata/__init__.py' 2026-11-11T00:54:07,249 adding 'orfdata/_pinned_genome.py' 2026-11-11T00:54:07,251 adding 'orfdata/_structure.py' 2026-11-11T00:54:07,253 adding 'orfdata/artifact_archives.py' 2026-11-11T00:54:07,257 adding 'orfdata/build.py' 2026-11-11T00:54:07,266 adding 'orfdata/catalog.py' 2026-11-11T00:54:07,268 adding 'orfdata/catalog_cli.py' 2026-11-11T00:54:07,270 adding 'orfdata/catalog_manifest.py' 2026-11-11T00:54:07,272 adding 'orfdata/catalogs.py' 2026-11-11T00:54:07,276 adding 'orfdata/cli.py' 2026-11-11T00:54:07,278 adding 'orfdata/cli_output.py' 2026-11-11T00:54:07,279 adding 'orfdata/cli_parser.py' 2026-11-11T00:54:07,281 adding 'orfdata/data_resources.py' 2026-11-11T00:54:07,289 adding 'orfdata/dataset.py' 2026-11-11T00:54:07,293 adding 'orfdata/dataset_cli.py' 2026-11-11T00:54:07,297 adding 'orfdata/datasets.py' 2026-11-11T00:54:07,301 adding 'orfdata/download_cli.py' 2026-11-11T00:54:07,305 adding 'orfdata/downloads.py' 2026-11-11T00:54:07,308 adding 'orfdata/ensembl.py' 2026-11-11T00:54:07,309 adding 'orfdata/errors.py' 2026-11-11T00:54:07,313 adding 'orfdata/evidence.py' 2026-11-11T00:54:07,315 adding 'orfdata/evidence_summary.py' 2026-11-11T00:54:07,317 adding 'orfdata/fasta.py' 2026-11-11T00:54:07,319 adding 'orfdata/genbank.py' 2026-11-11T00:54:07,322 adding 'orfdata/genomes.py' 2026-11-11T00:54:07,324 adding 'orfdata/genomes_cli.py' 2026-11-11T00:54:07,327 adding 'orfdata/gtf.py' 2026-11-11T00:54:07,329 adding 'orfdata/initiation_context.py' 2026-11-11T00:54:07,332 adding 'orfdata/install.py' 2026-11-11T00:54:07,337 adding 'orfdata/liftover.py' 2026-11-11T00:54:07,339 adding 'orfdata/liftover_cli.py' 2026-11-11T00:54:07,343 adding 'orfdata/measurements.py' 2026-11-11T00:54:07,354 adding 'orfdata/model.py' 2026-11-11T00:54:07,356 adding 'orfdata/net.py' 2026-11-11T00:54:07,358 adding 'orfdata/numeric_vector.py' 2026-11-11T00:54:07,362 adding 'orfdata/pairing.py' 2026-11-11T00:54:07,387 adding 'orfdata/proteome.py' 2026-11-11T00:54:07,389 adding 'orfdata/proteome_cli.py' 2026-11-11T00:54:07,392 adding 'orfdata/record_sources.py' 2026-11-11T00:54:07,394 adding 'orfdata/reference.py' 2026-11-11T00:54:07,396 adding 'orfdata/reference_ledger.py' 2026-11-11T00:54:07,398 adding 'orfdata/reference_mapping.py' 2026-11-11T00:54:07,400 adding 'orfdata/reference_table.py' 2026-11-11T00:54:07,401 adding 'orfdata/refseq.py' 2026-11-11T00:54:07,404 adding 'orfdata/rna.py' 2026-11-11T00:54:07,406 adding 'orfdata/search_reference.py' 2026-11-11T00:54:07,408 adding 'orfdata/sequence.py' 2026-11-11T00:54:07,409 adding 'orfdata/version.py' 2026-11-11T00:54:07,411 adding 'orfdata/viral.py' 2026-11-11T00:54:07,414 adding 'orfdata/viral_annotation.py' 2026-11-11T00:54:07,416 adding 'orfdata/viral_cli.py' 2026-11-11T00:54:07,418 adding 'orfdata/viral_coverage.py' 2026-11-11T00:54:07,420 adding 'orfdata/viral_installed.py' 2026-11-11T00:54:07,430 adding 'orfdata/viral_panel.py' 2026-11-11T00:54:07,432 adding 'orfdata/viral_registry.py' 2026-11-11T00:54:07,434 adding 'orfdata/viral_subsets.py' 2026-11-11T00:54:07,438 adding 'orfdata/data/catalogs.json' 2026-11-11T00:54:07,440 adding 'orfdata/data/chains.json' 2026-11-11T00:54:07,450 adding 'orfdata/data/datasets.json' 2026-11-11T00:54:07,453 adding 'orfdata/data/genomes.json' 2026-11-11T00:54:07,456 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-11-11T00:54:07,458 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-11-11T00:54:07,459 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-11-11T00:54:07,614 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-11-11T00:54:07,623 adding 'orfdata/data/orf-evidence/manifest.json' 2026-11-11T00:54:07,625 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-11-11T00:54:07,626 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-11-11T00:54:07,706 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-11-11T00:54:07,712 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-11-11T00:54:07,714 adding 'orfdata/data/viral/NOTICE.md' 2026-11-11T00:54:07,717 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv' 2026-11-11T00:54:07,722 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv' 2026-11-11T00:54:07,726 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv' 2026-11-11T00:54:07,728 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-11-11T00:54:07,729 adding 'orfdata/data/viral/subsets.yaml' 2026-11-11T00:54:07,731 adding 'orfdata/sources/__init__.py' 2026-11-11T00:54:07,734 adding 'orfdata/sources/copy.py' 2026-11-11T00:54:07,736 adding 'orfdata/sources/ingolia.py' 2026-11-11T00:54:07,739 adding 'orfdata/sources/kaabinejadian.py' 2026-11-11T00:54:07,742 adding 'orfdata/sources/mammary_stroma.py' 2026-11-11T00:54:07,743 adding 'orfdata/sources/ncorf_mammals.py' 2026-11-11T00:54:07,745 adding 'orfdata/sources/openprot.py' 2026-11-11T00:54:07,748 adding 'orfdata/sources/peptideatlas.py' 2026-11-11T00:54:07,750 adding 'orfdata/sources/pfizer.py' 2026-11-11T00:54:07,752 adding 'orfdata/sources/pfizer_attribution.py' 2026-11-11T00:54:07,755 adding 'orfdata/sources/pfizer_dataset.py' 2026-11-11T00:54:07,757 adding 'orfdata/sources/pfizer_definitions.py' 2026-11-11T00:54:07,759 adding 'orfdata/sources/pfizer_evidence.py' 2026-11-11T00:54:07,761 adding 'orfdata/sources/pfizer_lineage.py' 2026-11-11T00:54:07,763 adding 'orfdata/sources/pfizer_native.py' 2026-11-11T00:54:07,766 adding 'orfdata/sources/pfizer_queries.py' 2026-11-11T00:54:07,768 adding 'orfdata/sources/pfizer_rna.py' 2026-11-11T00:54:07,770 adding 'orfdata/sources/pfizer_vendor.py' 2026-11-11T00:54:07,772 adding 'orfdata/sources/riborf.py' 2026-11-11T00:54:07,775 adding 'orfdata/sources/riborf_native.py' 2026-11-11T00:54:07,778 adding 'orfdata/sources/wang.py' 2026-11-11T00:54:07,781 adding 'orfdata-0.47.0.dist-info/licenses/LICENSE' 2026-11-11T00:54:07,784 adding 'orfdata-0.47.0.dist-info/METADATA' 2026-11-11T00:54:07,785 adding 'orfdata-0.47.0.dist-info/WHEEL' 2026-11-11T00:54:07,786 adding 'orfdata-0.47.0.dist-info/entry_points.txt' 2026-11-11T00:54:07,787 adding 'orfdata-0.47.0.dist-info/top_level.txt' 2026-11-11T00:54:07,788 adding 'orfdata-0.47.0.dist-info/RECORD' 2026-11-11T00:54:07,819 removing build/bdist.linux-armv7l/wheel 2026-11-11T00:54:07,941 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-11-11T00:54:07,995 Created wheel for orfdata: filename=orfdata-0.47.0-py3-none-any.whl size=2330750 sha256=92882a945539359b0ef73bb6a7b1ddb1d56612d3e9481a683cd08a86a68c6cf0 2026-11-11T00:54:07,996 Stored in directory: /tmp/pip-ephem-wheel-cache-rkp_2bwb/wheels/bc/1d/2b/ddbb36fe8661ba8cb23598fa7ede6c0741317bb239269587ae 2026-11-11T00:54:08,012 Successfully built orfdata 2026-11-11T00:54:08,074 Removed build tracker: '/tmp/pip-build-tracker-17ch5xiy'