2026-11-12T01:05:50,160 Created temporary directory: /tmp/pip-ephem-wheel-cache-taj0w14q 2026-11-12T01:05:50,162 Created temporary directory: /tmp/pip-build-tracker-0st1edkw 2026-11-12T01:05:50,163 Initialized build tracking at /tmp/pip-build-tracker-0st1edkw 2026-11-12T01:05:50,164 Created build tracker: /tmp/pip-build-tracker-0st1edkw 2026-11-12T01:05:50,164 Entered build tracker: /tmp/pip-build-tracker-0st1edkw 2026-11-12T01:05:50,165 Created temporary directory: /tmp/pip-wheel-qk1x4z2v 2026-11-12T01:05:50,168 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-11-12T01:05:50,171 Created temporary directory: /tmp/pip-ephem-wheel-cache-hzqtrtnu 2026-11-12T01:05:50,200 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-11-12T01:05:50,204 2 location(s) to search for versions of orfdata: 2026-11-12T01:05:50,204 * https://pypi.org/simple/orfdata/ 2026-11-12T01:05:50,204 * https://www.piwheels.org/simple/orfdata/ 2026-11-12T01:05:50,204 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-11-12T01:05:50,205 Getting page https://pypi.org/simple/orfdata/ 2026-11-12T01:05:50,207 Found index url https://pypi.org/simple 2026-11-12T01:05:50,401 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-11-12T01:05:50,428 Skipping link: No binaries permitted for orfdata: 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https://archive1.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-12T01:05:52,270 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-12T01:05:52,270 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-12T01:05:52,271 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-12T01:05:52,271 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-11-12T01:05:52,272 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-11-12T01:05:52,273 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-11-12T01:05:52,299 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-11-12T01:05:52,317 Collecting orfdata==0.48.6 2026-11-12T01:05:52,319 Created temporary directory: /tmp/pip-unpack-swf6_jby 2026-11-12T01:05:52,551 Downloading orfdata-0.48.6.tar.gz (3.8 MB) 2026-11-12T01:05:54,374 Added orfdata==0.48.6 from https://files.pythonhosted.org/packages/82/b5/7a5fbd3b82f5fcbdeec35b961fa86798ca94d446c9d83ea3afeceed036d8/orfdata-0.48.6.tar.gz to build tracker '/tmp/pip-build-tracker-0st1edkw' 2026-11-12T01:05:54,380 Created temporary directory: /tmp/pip-build-env-bconistn 2026-11-12T01:05:54,384 Installing build dependencies: started 2026-11-12T01:05:54,385 Running command pip subprocess to install build dependencies 2026-11-12T01:05:55,779 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-11-12T01:05:56,202 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-11-12T01:05:56,225 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-11-12T01:06:07,828 Collecting setuptools>=77 2026-11-12T01:06:07,829 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata 2026-11-12T01:06:10,561 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB) 2026-11-12T01:06:10,787 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/wheel/ 2026-11-12T01:06:16,097 Collecting wheel 2026-11-12T01:06:16,098 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-11-12T01:06:19,600 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-11-12T01:06:19,814 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', RemoteDisconnected('Remote end closed connection without response'))': /simple/packaging/ 2026-11-12T01:06:24,609 Collecting packaging>=24.0 2026-11-12T01:06:24,610 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-11-12T01:06:27,512 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-11-12T01:06:31,957 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-11-12T01:06:31,999 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-11-12T01:06:35,063 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-11-12T01:06:40,241 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/wheel/wheel-0.48.0-py3-none-any.whl 2026-11-12T01:06:45,938 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLZeroReturnError(6, 'TLS/SSL connection has been closed (EOF) (_ssl.c:992)'))': /simple/wheel/wheel-0.48.0-py3-none-any.whl 2026-11-12T01:06:53,890 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-11-12T01:06:55,941 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-11-12T01:06:56,068 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-11-12T01:06:58,907 Installing collected packages: setuptools, packaging, wheel 2026-11-12T01:07:01,935 Creating /tmp/pip-build-env-bconistn/overlay/local/bin 2026-11-12T01:07:01,937 changing mode of /tmp/pip-build-env-bconistn/overlay/local/bin/wheel to 755 2026-11-12T01:07:01,959 Successfully installed packaging-26.3 setuptools-84.2.1 wheel-0.48.0 2026-11-12T01:07:02,244 Installing build dependencies: finished with status 'done' 2026-11-12T01:07:02,250 Getting requirements to build wheel: started 2026-11-12T01:07:02,252 Running command Getting requirements to build wheel 2026-11-12T01:07:03,011 running egg_info 2026-11-12T01:07:03,017 writing orfdata.egg-info/PKG-INFO 2026-11-12T01:07:03,024 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-11-12T01:07:03,026 writing entry points to orfdata.egg-info/entry_points.txt 2026-11-12T01:07:03,030 writing requirements to orfdata.egg-info/requires.txt 2026-11-12T01:07:03,031 writing top-level names to orfdata.egg-info/top_level.txt 2026-11-12T01:07:03,067 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-12T01:07:03,089 reading manifest template 'MANIFEST.in' 2026-11-12T01:07:03,776 adding license file 'LICENSE' 2026-11-12T01:07:03,798 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-12T01:07:03,897 Getting requirements to build wheel: finished with status 'done' 2026-11-12T01:07:03,901 Created temporary directory: /tmp/pip-modern-metadata-0uab2hda 2026-11-12T01:07:03,903 Preparing metadata (pyproject.toml): started 2026-11-12T01:07:03,904 Running command Preparing metadata (pyproject.toml) 2026-11-12T01:07:04,570 running dist_info 2026-11-12T01:07:04,581 creating /tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info 2026-11-12T01:07:04,582 writing /tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info/PKG-INFO 2026-11-12T01:07:04,589 writing dependency_links to /tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info/dependency_links.txt 2026-11-12T01:07:04,591 writing entry points to /tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info/entry_points.txt 2026-11-12T01:07:04,595 writing requirements to /tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info/requires.txt 2026-11-12T01:07:04,596 writing top-level names to /tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info/top_level.txt 2026-11-12T01:07:04,598 writing manifest file '/tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info/SOURCES.txt' 2026-11-12T01:07:04,631 reading manifest file '/tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info/SOURCES.txt' 2026-11-12T01:07:04,633 reading manifest template 'MANIFEST.in' 2026-11-12T01:07:05,356 adding license file 'LICENSE' 2026-11-12T01:07:05,372 writing manifest file '/tmp/pip-modern-metadata-0uab2hda/orfdata.egg-info/SOURCES.txt' 2026-11-12T01:07:05,374 creating '/tmp/pip-modern-metadata-0uab2hda/orfdata-0.48.6.dist-info' 2026-11-12T01:07:05,505 Preparing metadata (pyproject.toml): finished with status 'done' 2026-11-12T01:07:05,509 Source in /tmp/pip-wheel-qk1x4z2v/orfdata_41393e45fe934f9bbf3f30b14602cb63 has version 0.48.6, which satisfies requirement orfdata==0.48.6 from https://files.pythonhosted.org/packages/82/b5/7a5fbd3b82f5fcbdeec35b961fa86798ca94d446c9d83ea3afeceed036d8/orfdata-0.48.6.tar.gz 2026-11-12T01:07:05,510 Removed orfdata==0.48.6 from https://files.pythonhosted.org/packages/82/b5/7a5fbd3b82f5fcbdeec35b961fa86798ca94d446c9d83ea3afeceed036d8/orfdata-0.48.6.tar.gz from build tracker '/tmp/pip-build-tracker-0st1edkw' 2026-11-12T01:07:05,516 Created temporary directory: /tmp/pip-unpack-nxqktdxt 2026-11-12T01:07:05,517 Building wheels for collected packages: orfdata 2026-11-12T01:07:05,522 Created temporary directory: /tmp/pip-wheel-eusyejyn 2026-11-12T01:07:05,522 Destination directory: /tmp/pip-wheel-eusyejyn 2026-11-12T01:07:05,525 Building wheel for orfdata (pyproject.toml): started 2026-11-12T01:07:05,529 Running command Building wheel for orfdata (pyproject.toml) 2026-11-12T01:07:06,200 running bdist_wheel 2026-11-12T01:07:06,218 running build 2026-11-12T01:07:06,219 running build_py 2026-11-12T01:07:06,226 creating build/lib/orfdata 2026-11-12T01:07:06,228 copying orfdata/net.py -> build/lib/orfdata 2026-11-12T01:07:06,231 copying orfdata/viral_registry.py -> build/lib/orfdata 2026-11-12T01:07:06,233 copying orfdata/__init__.py -> build/lib/orfdata 2026-11-12T01:07:06,236 copying orfdata/viral_cli.py -> build/lib/orfdata 2026-11-12T01:07:06,238 copying orfdata/reference_table.py -> build/lib/orfdata 2026-11-12T01:07:06,241 copying orfdata/_structure.py -> build/lib/orfdata 2026-11-12T01:07:06,244 copying orfdata/cli_parser.py -> build/lib/orfdata 2026-11-12T01:07:06,247 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-11-12T01:07:06,250 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-11-12T01:07:06,252 copying orfdata/record_sources.py -> build/lib/orfdata 2026-11-12T01:07:06,255 copying orfdata/source_cds.py -> build/lib/orfdata 2026-11-12T01:07:06,258 copying orfdata/downloads.py -> build/lib/orfdata 2026-11-12T01:07:06,261 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-11-12T01:07:06,263 copying orfdata/liftover.py -> build/lib/orfdata 2026-11-12T01:07:06,266 copying orfdata/proteome.py -> build/lib/orfdata 2026-11-12T01:07:06,271 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-11-12T01:07:06,273 copying orfdata/viral.py -> build/lib/orfdata 2026-11-12T01:07:06,275 copying orfdata/install.py -> build/lib/orfdata 2026-11-12T01:07:06,278 copying orfdata/viral_annotation.py -> build/lib/orfdata 2026-11-12T01:07:06,280 copying orfdata/pairing.py -> build/lib/orfdata 2026-11-12T01:07:06,283 copying orfdata/search_reference.py -> build/lib/orfdata 2026-11-12T01:07:06,286 copying orfdata/numeric_vector.py -> build/lib/orfdata 2026-11-12T01:07:06,287 copying orfdata/measurements.py -> build/lib/orfdata 2026-11-12T01:07:06,290 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-11-12T01:07:06,292 copying orfdata/download_cli.py -> build/lib/orfdata 2026-11-12T01:07:06,295 copying orfdata/refseq.py -> build/lib/orfdata 2026-11-12T01:07:06,297 copying orfdata/dataset.py -> build/lib/orfdata 2026-11-12T01:07:06,300 copying orfdata/genomes.py -> build/lib/orfdata 2026-11-12T01:07:06,302 copying orfdata/rna.py -> build/lib/orfdata 2026-11-12T01:07:06,305 copying orfdata/viral_installed.py -> build/lib/orfdata 2026-11-12T01:07:06,308 copying orfdata/fasta.py -> build/lib/orfdata 2026-11-12T01:07:06,309 copying orfdata/cli_output.py -> build/lib/orfdata 2026-11-12T01:07:06,312 copying orfdata/version.py -> build/lib/orfdata 2026-11-12T01:07:06,313 copying orfdata/reference.py -> build/lib/orfdata 2026-11-12T01:07:06,316 copying orfdata/viral_panel.py -> build/lib/orfdata 2026-11-12T01:07:06,320 copying orfdata/reference_ledger.py -> build/lib/orfdata 2026-11-12T01:07:06,323 copying orfdata/gtf.py -> build/lib/orfdata 2026-11-12T01:07:06,325 copying orfdata/artifact_archives.py -> build/lib/orfdata 2026-11-12T01:07:06,328 copying orfdata/datasets.py -> build/lib/orfdata 2026-11-12T01:07:06,330 copying orfdata/errors.py -> build/lib/orfdata 2026-11-12T01:07:06,332 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-11-12T01:07:06,335 copying orfdata/data_resources.py -> build/lib/orfdata 2026-11-12T01:07:06,337 copying orfdata/sequence.py -> build/lib/orfdata 2026-11-12T01:07:06,340 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-11-12T01:07:06,342 copying orfdata/ensembl.py -> build/lib/orfdata 2026-11-12T01:07:06,345 copying orfdata/evidence.py -> build/lib/orfdata 2026-11-12T01:07:06,347 copying orfdata/cli.py -> build/lib/orfdata 2026-11-12T01:07:06,350 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-11-12T01:07:06,352 copying orfdata/cache.py -> build/lib/orfdata 2026-11-12T01:07:06,355 copying orfdata/build.py -> build/lib/orfdata 2026-11-12T01:07:06,358 copying orfdata/viral_coverage.py -> build/lib/orfdata 2026-11-12T01:07:06,360 copying orfdata/viral_subsets.py -> build/lib/orfdata 2026-11-12T01:07:06,363 copying orfdata/source_records.py -> build/lib/orfdata 2026-11-12T01:07:06,365 copying orfdata/model.py -> build/lib/orfdata 2026-11-12T01:07:06,368 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-11-12T01:07:06,371 copying orfdata/genbank.py -> build/lib/orfdata 2026-11-12T01:07:06,373 copying orfdata/catalogs.py -> build/lib/orfdata 2026-11-12T01:07:06,376 copying orfdata/catalog.py -> build/lib/orfdata 2026-11-12T01:07:06,379 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-11-12T01:07:06,382 creating build/lib/orfdata/sources 2026-11-12T01:07:06,383 copying orfdata/sources/riborf_native.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,386 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,389 copying orfdata/sources/pfizer_definitions.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,391 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,394 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,396 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,398 copying orfdata/sources/pfizer_lineage.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,401 copying orfdata/sources/mammary_stroma.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,404 copying orfdata/sources/pfizer_queries.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,407 copying orfdata/sources/pfizer_native.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,409 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,412 copying orfdata/sources/pfizer_evidence.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,414 copying orfdata/sources/pfizer_dataset.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,417 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,419 copying orfdata/sources/pfizer_attribution.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,422 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,424 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,427 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,430 copying orfdata/sources/pfizer_vendor.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,432 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,435 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-11-12T01:07:06,439 running egg_info 2026-11-12T01:07:06,449 writing orfdata.egg-info/PKG-INFO 2026-11-12T01:07:06,455 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-11-12T01:07:06,457 writing entry points to orfdata.egg-info/entry_points.txt 2026-11-12T01:07:06,460 writing requirements to orfdata.egg-info/requires.txt 2026-11-12T01:07:06,461 writing top-level names to orfdata.egg-info/top_level.txt 2026-11-12T01:07:06,484 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-12T01:07:06,507 reading manifest template 'MANIFEST.in' 2026-11-12T01:07:07,473 adding license file 'LICENSE' 2026-11-12T01:07:07,494 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-11-12T01:07:07,512 creating build/lib/orfdata/data/uorf-evidence 2026-11-12T01:07:07,514 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-11-12T01:07:07,517 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-11-12T01:07:07,519 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-11-12T01:07:07,559 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-11-12T01:07:07,562 creating build/lib/orfdata/data/orf-evidence 2026-11-12T01:07:07,563 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-11-12T01:07:07,566 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-11-12T01:07:07,569 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-11-12T01:07:07,614 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-11-12T01:07:07,620 creating build/lib/orfdata/data/ires 2026-11-12T01:07:07,622 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-11-12T01:07:07,628 creating build/lib/orfdata/data/viral 2026-11-12T01:07:07,630 copying orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/lib/orfdata/data/viral 2026-11-12T01:07:07,639 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-11-12T01:07:07,643 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-11-12T01:07:07,645 copying orfdata/data/viral/subsets.yaml -> build/lib/orfdata/data/viral 2026-11-12T01:07:07,648 copying orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/lib/orfdata/data/viral 2026-11-12T01:07:07,651 copying orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/lib/orfdata/data/viral 2026-11-12T01:07:07,655 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-11-12T01:07:07,661 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-11-12T01:07:07,664 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-11-12T01:07:07,667 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-11-12T01:07:07,669 copying orfdata/data/source_records.json -> build/lib/orfdata/data 2026-11-12T01:07:07,692 installing to build/bdist.linux-armv7l/wheel 2026-11-12T01:07:07,693 running install 2026-11-12T01:07:07,715 running install_lib 2026-11-12T01:07:07,720 creating build/bdist.linux-armv7l/wheel 2026-11-12T01:07:07,723 creating build/bdist.linux-armv7l/wheel/orfdata 2026-11-12T01:07:07,724 copying build/lib/orfdata/net.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,726 copying build/lib/orfdata/viral_registry.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,729 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,731 copying build/lib/orfdata/viral_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,733 copying build/lib/orfdata/reference_table.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,736 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,738 copying build/lib/orfdata/cli_parser.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,740 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,743 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,745 copying build/lib/orfdata/record_sources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,748 copying build/lib/orfdata/source_cds.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,750 copying build/lib/orfdata/downloads.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,752 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,755 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,758 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,764 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,766 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,769 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,771 copying build/lib/orfdata/viral_annotation.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,774 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,777 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,779 copying build/lib/orfdata/numeric_vector.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,781 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,784 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,786 copying build/lib/orfdata/download_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,789 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,792 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,795 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,798 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,800 copying build/lib/orfdata/viral_installed.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,803 copying build/lib/orfdata/fasta.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,806 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-11-12T01:07:07,807 copying build/lib/orfdata/sources/riborf_native.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,809 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,812 copying build/lib/orfdata/sources/pfizer_definitions.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,815 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,817 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,820 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,823 copying build/lib/orfdata/sources/pfizer_lineage.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,827 copying build/lib/orfdata/sources/mammary_stroma.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,832 copying build/lib/orfdata/sources/pfizer_queries.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,837 copying build/lib/orfdata/sources/pfizer_native.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,843 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,849 copying build/lib/orfdata/sources/pfizer_evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,856 copying build/lib/orfdata/sources/pfizer_dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,861 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,863 copying build/lib/orfdata/sources/pfizer_attribution.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,866 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,869 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,872 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,875 copying build/lib/orfdata/sources/pfizer_vendor.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,878 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,881 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-11-12T01:07:07,885 copying build/lib/orfdata/cli_output.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,889 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,892 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,896 copying build/lib/orfdata/viral_panel.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,905 copying build/lib/orfdata/reference_ledger.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,914 copying build/lib/orfdata/gtf.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,921 copying build/lib/orfdata/artifact_archives.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,927 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,935 copying build/lib/orfdata/errors.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,942 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,950 copying build/lib/orfdata/data_resources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,957 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,963 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,969 copying build/lib/orfdata/ensembl.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:07,979 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-11-12T01:07:07,982 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-12T01:07:07,991 copying build/lib/orfdata/data/source_records.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-12T01:07:07,998 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-12T01:07:08,019 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-11-12T01:07:08,025 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-12T01:07:08,039 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-12T01:07:08,051 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-12T01:07:08,108 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-11-12T01:07:08,118 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-11-12T01:07:08,121 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-12T01:07:08,130 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-12T01:07:08,137 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-12T01:07:08,156 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-11-12T01:07:08,159 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-11-12T01:07:08,160 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-12T01:07:08,166 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-12T01:07:08,172 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-12T01:07:08,177 copying build/lib/orfdata/data/viral/subsets.yaml -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-12T01:07:08,183 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-12T01:07:08,189 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-11-12T01:07:08,201 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-11-12T01:07:08,205 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-11-12T01:07:08,215 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-12T01:07:08,219 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-11-12T01:07:08,221 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,223 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,227 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,232 copying build/lib/orfdata/cache.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,237 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,243 copying build/lib/orfdata/viral_coverage.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,251 copying build/lib/orfdata/viral_subsets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,259 copying build/lib/orfdata/source_records.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,265 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,274 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,284 copying build/lib/orfdata/genbank.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,291 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,299 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,310 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-11-12T01:07:08,319 running install_egg_info 2026-11-12T01:07:08,330 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.48.6-py3.11.egg-info 2026-11-12T01:07:08,377 running install_scripts 2026-11-12T01:07:08,401 creating build/bdist.linux-armv7l/wheel/orfdata-0.48.6.dist-info/WHEEL 2026-11-12T01:07:08,405 creating '/tmp/pip-wheel-eusyejyn/.tmp-hoge10dc/orfdata-0.48.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-11-12T01:07:08,411 adding 'orfdata/__init__.py' 2026-11-12T01:07:08,414 adding 'orfdata/_pinned_genome.py' 2026-11-12T01:07:08,417 adding 'orfdata/_structure.py' 2026-11-12T01:07:08,420 adding 'orfdata/artifact_archives.py' 2026-11-12T01:07:08,426 adding 'orfdata/build.py' 2026-11-12T01:07:08,429 adding 'orfdata/cache.py' 2026-11-12T01:07:08,444 adding 'orfdata/catalog.py' 2026-11-12T01:07:08,448 adding 'orfdata/catalog_cli.py' 2026-11-12T01:07:08,450 adding 'orfdata/catalog_manifest.py' 2026-11-12T01:07:08,454 adding 'orfdata/catalogs.py' 2026-11-12T01:07:08,460 adding 'orfdata/cli.py' 2026-11-12T01:07:08,463 adding 'orfdata/cli_output.py' 2026-11-12T01:07:08,466 adding 'orfdata/cli_parser.py' 2026-11-12T01:07:08,469 adding 'orfdata/data_resources.py' 2026-11-12T01:07:08,476 adding 'orfdata/dataset.py' 2026-11-12T01:07:08,481 adding 'orfdata/dataset_cli.py' 2026-11-12T01:07:08,485 adding 'orfdata/datasets.py' 2026-11-12T01:07:08,490 adding 'orfdata/download_cli.py' 2026-11-12T01:07:08,494 adding 'orfdata/downloads.py' 2026-11-12T01:07:08,498 adding 'orfdata/ensembl.py' 2026-11-12T01:07:08,500 adding 'orfdata/errors.py' 2026-11-12T01:07:08,504 adding 'orfdata/evidence.py' 2026-11-12T01:07:08,506 adding 'orfdata/evidence_summary.py' 2026-11-12T01:07:08,509 adding 'orfdata/fasta.py' 2026-11-12T01:07:08,512 adding 'orfdata/genbank.py' 2026-11-12T01:07:08,515 adding 'orfdata/genomes.py' 2026-11-12T01:07:08,517 adding 'orfdata/genomes_cli.py' 2026-11-12T01:07:08,520 adding 'orfdata/gtf.py' 2026-11-12T01:07:08,522 adding 'orfdata/initiation_context.py' 2026-11-12T01:07:08,525 adding 'orfdata/install.py' 2026-11-12T01:07:08,528 adding 'orfdata/liftover.py' 2026-11-12T01:07:08,530 adding 'orfdata/liftover_cli.py' 2026-11-12T01:07:08,533 adding 'orfdata/measurements.py' 2026-11-12T01:07:08,540 adding 'orfdata/model.py' 2026-11-12T01:07:08,542 adding 'orfdata/net.py' 2026-11-12T01:07:08,544 adding 'orfdata/numeric_vector.py' 2026-11-12T01:07:08,547 adding 'orfdata/pairing.py' 2026-11-12T01:07:08,564 adding 'orfdata/proteome.py' 2026-11-12T01:07:08,567 adding 'orfdata/proteome_cli.py' 2026-11-12T01:07:08,570 adding 'orfdata/record_sources.py' 2026-11-12T01:07:08,572 adding 'orfdata/reference.py' 2026-11-12T01:07:08,575 adding 'orfdata/reference_ledger.py' 2026-11-12T01:07:08,577 adding 'orfdata/reference_mapping.py' 2026-11-12T01:07:08,579 adding 'orfdata/reference_table.py' 2026-11-12T01:07:08,581 adding 'orfdata/refseq.py' 2026-11-12T01:07:08,583 adding 'orfdata/rna.py' 2026-11-12T01:07:08,586 adding 'orfdata/search_reference.py' 2026-11-12T01:07:08,588 adding 'orfdata/sequence.py' 2026-11-12T01:07:08,590 adding 'orfdata/source_cds.py' 2026-11-12T01:07:08,592 adding 'orfdata/source_records.py' 2026-11-12T01:07:08,593 adding 'orfdata/version.py' 2026-11-12T01:07:08,596 adding 'orfdata/viral.py' 2026-11-12T01:07:08,600 adding 'orfdata/viral_annotation.py' 2026-11-12T01:07:08,602 adding 'orfdata/viral_cli.py' 2026-11-12T01:07:08,605 adding 'orfdata/viral_coverage.py' 2026-11-12T01:07:08,607 adding 'orfdata/viral_installed.py' 2026-11-12T01:07:08,617 adding 'orfdata/viral_panel.py' 2026-11-12T01:07:08,620 adding 'orfdata/viral_registry.py' 2026-11-12T01:07:08,622 adding 'orfdata/viral_subsets.py' 2026-11-12T01:07:08,627 adding 'orfdata/data/catalogs.json' 2026-11-12T01:07:08,630 adding 'orfdata/data/chains.json' 2026-11-12T01:07:08,640 adding 'orfdata/data/datasets.json' 2026-11-12T01:07:08,644 adding 'orfdata/data/genomes.json' 2026-11-12T01:07:08,645 adding 'orfdata/data/source_records.json' 2026-11-12T01:07:08,649 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-11-12T01:07:08,651 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-11-12T01:07:08,653 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-11-12T01:07:08,807 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-11-12T01:07:08,820 adding 'orfdata/data/orf-evidence/manifest.json' 2026-11-12T01:07:08,822 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-11-12T01:07:08,824 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-11-12T01:07:08,904 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-11-12T01:07:08,912 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-11-12T01:07:08,914 adding 'orfdata/data/viral/NOTICE.md' 2026-11-12T01:07:08,917 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv' 2026-11-12T01:07:08,923 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv' 2026-11-12T01:07:08,928 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv' 2026-11-12T01:07:08,930 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-11-12T01:07:08,932 adding 'orfdata/data/viral/subsets.yaml' 2026-11-12T01:07:08,935 adding 'orfdata/sources/__init__.py' 2026-11-12T01:07:08,938 adding 'orfdata/sources/copy.py' 2026-11-12T01:07:08,941 adding 'orfdata/sources/ingolia.py' 2026-11-12T01:07:08,944 adding 'orfdata/sources/kaabinejadian.py' 2026-11-12T01:07:08,947 adding 'orfdata/sources/mammary_stroma.py' 2026-11-12T01:07:08,950 adding 'orfdata/sources/ncorf_mammals.py' 2026-11-12T01:07:08,952 adding 'orfdata/sources/openprot.py' 2026-11-12T01:07:08,955 adding 'orfdata/sources/peptideatlas.py' 2026-11-12T01:07:08,958 adding 'orfdata/sources/pfizer.py' 2026-11-12T01:07:08,961 adding 'orfdata/sources/pfizer_attribution.py' 2026-11-12T01:07:08,964 adding 'orfdata/sources/pfizer_dataset.py' 2026-11-12T01:07:08,967 adding 'orfdata/sources/pfizer_definitions.py' 2026-11-12T01:07:08,969 adding 'orfdata/sources/pfizer_evidence.py' 2026-11-12T01:07:08,972 adding 'orfdata/sources/pfizer_lineage.py' 2026-11-12T01:07:08,975 adding 'orfdata/sources/pfizer_native.py' 2026-11-12T01:07:08,977 adding 'orfdata/sources/pfizer_queries.py' 2026-11-12T01:07:08,980 adding 'orfdata/sources/pfizer_rna.py' 2026-11-12T01:07:08,983 adding 'orfdata/sources/pfizer_vendor.py' 2026-11-12T01:07:08,986 adding 'orfdata/sources/riborf.py' 2026-11-12T01:07:08,988 adding 'orfdata/sources/riborf_native.py' 2026-11-12T01:07:08,991 adding 'orfdata/sources/wang.py' 2026-11-12T01:07:08,995 adding 'orfdata-0.48.6.dist-info/licenses/LICENSE' 2026-11-12T01:07:08,997 adding 'orfdata-0.48.6.dist-info/METADATA' 2026-11-12T01:07:08,998 adding 'orfdata-0.48.6.dist-info/WHEEL' 2026-11-12T01:07:08,999 adding 'orfdata-0.48.6.dist-info/entry_points.txt' 2026-11-12T01:07:09,000 adding 'orfdata-0.48.6.dist-info/top_level.txt' 2026-11-12T01:07:09,002 adding 'orfdata-0.48.6.dist-info/RECORD' 2026-11-12T01:07:09,032 removing build/bdist.linux-armv7l/wheel 2026-11-12T01:07:09,158 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-11-12T01:07:09,223 Created wheel for orfdata: filename=orfdata-0.48.6-py3-none-any.whl size=2334865 sha256=09caaebb6040d8be1161cecb4a53ef44146c8a6dfc793c0303dc11e8fb6c4e00 2026-11-12T01:07:09,225 Stored in directory: /tmp/pip-ephem-wheel-cache-hzqtrtnu/wheels/4f/dd/3b/910312989d7a7822634812efb0ac726dfa72d415b6224e4dad 2026-11-12T01:07:09,239 Successfully built orfdata 2026-11-12T01:07:09,306 Removed build tracker: '/tmp/pip-build-tracker-0st1edkw'