2026-11-13T14:42:42,612 Created temporary directory: /tmp/pip-ephem-wheel-cache-k4ovuprf
2026-11-13T14:42:42,614 Created temporary directory: /tmp/pip-build-tracker-4c1kycdl
2026-11-13T14:42:42,615 Initialized build tracking at /tmp/pip-build-tracker-4c1kycdl
2026-11-13T14:42:42,616 Created build tracker: /tmp/pip-build-tracker-4c1kycdl
2026-11-13T14:42:42,616 Entered build tracker: /tmp/pip-build-tracker-4c1kycdl
2026-11-13T14:42:42,617 Created temporary directory: /tmp/pip-wheel-qzmojhav
2026-11-13T14:42:42,620 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-11-13T14:42:42,622 Created temporary directory: /tmp/pip-ephem-wheel-cache-syhj35b3
2026-11-13T14:42:42,647 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-11-13T14:42:42,651 2 location(s) to search for versions of isovar:
2026-11-13T14:42:42,651 * https://pypi.org/simple/isovar/
2026-11-13T14:42:42,651 * https://www.piwheels.org/simple/isovar/
2026-11-13T14:42:42,651 Fetching project page and analyzing links: https://pypi.org/simple/isovar/
2026-11-13T14:42:42,652 Getting page https://pypi.org/simple/isovar/
2026-11-13T14:42:42,654 Found index url https://pypi.org/simple
2026-11-13T14:42:42,866 Fetched page https://pypi.org/simple/isovar/ as application/vnd.pypi.simple.v1+json
2026-11-13T14:42:42,963   Found link https://files.pythonhosted.org/packages/b6/80/350ac9b97f7c872d7f2422a11bdb228a0286661fe2983884724735bff630/isovar-0.0.5.tar.gz (from https://pypi.org/simple/isovar/), version: 0.0.5
2026-11-13T14:42:42,964   Found link https://files.pythonhosted.org/packages/09/7c/e80ccfcab66948d3c69dd70159439be76843cfcc08421a7b0e50248a6c34/isovar-0.0.6.tar.gz (from https://pypi.org/simple/isovar/), version: 0.0.6
2026-11-13T14:42:42,965   Found link https://files.pythonhosted.org/packages/ac/c8/a208dbd44c8e1010147b662a62fc5cb4114024eebb5a47dd9da1beca8aa8/isovar-0.1.0.tar.gz (from https://pypi.org/simple/isovar/), version: 0.1.0
2026-11-13T14:42:42,966   Found link https://files.pythonhosted.org/packages/f8/2c/7217a7fe510804c536a379cf7e66cf92fb056bb5d9a552de1d4774d6fe12/isovar-0.1.3.tar.gz (from https://pypi.org/simple/isovar/), version: 0.1.3
2026-11-13T14:42:42,966   Found link https://files.pythonhosted.org/packages/1d/1f/d51e079dd9a1d9c572405e64b25feffdcdeefac96786451d4caa1bab671e/isovar-0.1.5.tar.gz (from https://pypi.org/simple/isovar/), version: 0.1.5
2026-11-13T14:42:42,967   Found link https://files.pythonhosted.org/packages/ff/ae/5df86c7a7f4449949dfc43961e50ac47963582c303b40659a1762feb14c2/isovar-0.2.0.tar.gz (from https://pypi.org/simple/isovar/), version: 0.2.0
2026-11-13T14:42:42,968   Found link https://files.pythonhosted.org/packages/ab/e1/110b3dab08491c53f28a69c65c9effd112c0ae4a9412a6ff3328655dee91/isovar-0.2.1.tar.gz (from https://pypi.org/simple/isovar/), version: 0.2.1
2026-11-13T14:42:42,969   Found link https://files.pythonhosted.org/packages/03/ac/1627b0180ffd2aff813066e0f455d65c49d13e1774e944dfc29726c247b0/isovar-0.2.2.tar.gz (from https://pypi.org/simple/isovar/), version: 0.2.2
2026-11-13T14:42:42,969   Found link https://files.pythonhosted.org/packages/72/bf/82e36d137b0866be27e0a27c1545fa4fb0b519e1aac31734b239fff5bff9/isovar-0.2.3.tar.gz (from https://pypi.org/simple/isovar/), version: 0.2.3
2026-11-13T14:42:42,970   Found link https://files.pythonhosted.org/packages/ef/24/21c68468b0b1130123aadc8451be794806adf0ebc7a63f8eb0e0ad30fca3/isovar-0.2.4.tar.gz (from https://pypi.org/simple/isovar/), version: 0.2.4
2026-11-13T14:42:42,971   Found link https://files.pythonhosted.org/packages/d7/d7/b4749eb20a87bd034eae20ee564eb8d69a109a3c74ddfd0044a4ad9e4d0a/isovar-0.4.0.tar.gz (from https://pypi.org/simple/isovar/), version: 0.4.0
2026-11-13T14:42:42,971   Found link https://files.pythonhosted.org/packages/1e/5a/5dc4f54bb9d10f3bd3755b5e87bfd51b33f5c538b69af6d807509698a297/isovar-0.5.0.tar.gz (from https://pypi.org/simple/isovar/), version: 0.5.0
2026-11-13T14:42:42,972   Found link https://files.pythonhosted.org/packages/c9/a1/c06698d8df3d589ba44819394d4c78273c81d6472135fe96ce73b01f33b3/isovar-0.5.2.tar.gz (from https://pypi.org/simple/isovar/), version: 0.5.2
2026-11-13T14:42:42,973   Found link https://files.pythonhosted.org/packages/19/c9/6e8f71fb30ac619216f5ccbf0a444ba2cf19fc0e9955c5d1ef8984e01264/isovar-0.6.0.tar.gz (from https://pypi.org/simple/isovar/), version: 0.6.0
2026-11-13T14:42:42,973   Found link https://files.pythonhosted.org/packages/a2/c7/c98501932e9bf937a69d9f13cd3cdc91b92936520f2f27d3c3961bf14c2f/isovar-0.6.1.tar.gz (from https://pypi.org/simple/isovar/), version: 0.6.1
2026-11-13T14:42:42,974   Found link https://files.pythonhosted.org/packages/b3/6e/66e364fe1888d0a1c57e34142d1a10c17c2a74fec1d2ac2229c7f8405ec3/isovar-0.7.0.tar.gz (from https://pypi.org/simple/isovar/), version: 0.7.0
2026-11-13T14:42:42,975   Found link https://files.pythonhosted.org/packages/27/84/9251647726f83d32a9af94b54e9faacd046b9ecca0cd415f436acde977b9/isovar-0.7.1.tar.gz (from https://pypi.org/simple/isovar/), version: 0.7.1
2026-11-13T14:42:42,975   Found link https://files.pythonhosted.org/packages/b0/1c/c0f91c7c46aac659e075d34e0d55a05c5dbfd38727a4ee39911f6bf7d1e6/isovar-0.7.2.tar.gz (from https://pypi.org/simple/isovar/), version: 0.7.2
2026-11-13T14:42:42,976   Found link https://files.pythonhosted.org/packages/0e/f2/dc74cc8ce342d8ea408452ebda0ad498f1879c28e2d01b42f96e8ea7cba1/isovar-0.7.3.tar.gz (from https://pypi.org/simple/isovar/), version: 0.7.3
2026-11-13T14:42:42,976   Found link https://files.pythonhosted.org/packages/0d/3c/f7108c0b1aba27d58b30075287874b88b194cc34ba8938a89cfdc40fbc19/isovar-0.7.4.tar.gz (from https://pypi.org/simple/isovar/), version: 0.7.4
2026-11-13T14:42:42,977   Found link https://files.pythonhosted.org/packages/71/d3/bae7fe9f6548b2a6f7824dd3eca34fab47971070b8a5559f1c8ba80f263a/isovar-0.7.5.tar.gz (from https://pypi.org/simple/isovar/), version: 0.7.5
2026-11-13T14:42:42,978   Found link https://files.pythonhosted.org/packages/76/78/807f6ebeb5f5ecb974093a18e62e7cb70695d55289448df65495be290052/isovar-0.8.0.tar.gz (from https://pypi.org/simple/isovar/), version: 0.8.0
2026-11-13T14:42:42,978   Found link https://files.pythonhosted.org/packages/8d/8d/231aa93b4e2668cb701253e8b3b62c0a8cf0d76d5570ebd80999ee1d1240/isovar-0.8.1.tar.gz (from https://pypi.org/simple/isovar/), version: 0.8.1
2026-11-13T14:42:42,979   Found link https://files.pythonhosted.org/packages/37/33/79dad79cecfc192bdbd65593c0ebf693ab7ca44aeba59f6fcda3e2933f21/isovar-0.8.2.tar.gz (from https://pypi.org/simple/isovar/), version: 0.8.2
2026-11-13T14:42:42,980   Found link https://files.pythonhosted.org/packages/8c/ab/99e3ac9a148d0acd27abf5e6d640eba635cdfdeacd876bee1bf27c0bf05f/isovar-0.8.3.tar.gz (from https://pypi.org/simple/isovar/), version: 0.8.3
2026-11-13T14:42:42,981   Found link https://files.pythonhosted.org/packages/da/ed/1f4d8fed9c2cc26b80124726bd7dd40d4f5b7e5b8afdadb8a62077bd58a1/isovar-0.8.5.tar.gz (from https://pypi.org/simple/isovar/), version: 0.8.5
2026-11-13T14:42:42,981   Found link https://files.pythonhosted.org/packages/54/91/402d3e534b4b063e6fbba41ae872627ed3e67b0ad1246f9721eb652f2237/isovar-0.9.0.tar.gz (from https://pypi.org/simple/isovar/), version: 0.9.0
2026-11-13T14:42:42,982   Found link https://files.pythonhosted.org/packages/d4/ac/f45056b97d888ecc95ce3694d270a08c9610eb45823c0ca6a907a156d7f5/isovar-1.0.0.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.0
2026-11-13T14:42:42,982   Found link https://files.pythonhosted.org/packages/92/cd/3ee3c6155d5471cdb712ccc2c59e19ebfc896ace3adbb322d26bd45dace9/isovar-1.0.1.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.1
2026-11-13T14:42:42,983   Found link https://files.pythonhosted.org/packages/77/2f/222f0d24e0baf292e4b87a9a0b1d0313668d649bbbbe3be1ede886a8e5eb/isovar-1.0.2.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.2
2026-11-13T14:42:42,984   Found link https://files.pythonhosted.org/packages/28/32/2279cf21d9d31608c4169a18e26aefd82ff9ab6d8df8df54f860f31b0601/isovar-1.0.3.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.3
2026-11-13T14:42:42,985   Found link https://files.pythonhosted.org/packages/f5/cc/8d7a6eeebae8cf6d31df23bcf5dcb5f14aad7fd4ef12790393e16426da12/isovar-1.0.4.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.4
2026-11-13T14:42:42,985   Found link https://files.pythonhosted.org/packages/e2/e3/470ea2f19176ace9ea4b19d855e025456aa529748e30c1a66e3ad1874559/isovar-1.0.5.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.5
2026-11-13T14:42:42,986   Found link https://files.pythonhosted.org/packages/0f/9f/358c17b6d0527e0b1ceb056d1b8fbb2bf0307d5181f32d4e72089bdce605/isovar-1.0.6.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.6
2026-11-13T14:42:42,986   Found link https://files.pythonhosted.org/packages/66/c1/95a0e55994915b6cbbf4bccbcafeb88b9db4838d7b934341bb97ff97b2e7/isovar-1.0.7.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.7
2026-11-13T14:42:42,987   Found link https://files.pythonhosted.org/packages/80/db/7d4cdb69c95e6a6abbfabdff6145ad18a80125d4fb72ae90510c9547712c/isovar-1.0.8.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.8
2026-11-13T14:42:42,988   Found link https://files.pythonhosted.org/packages/72/8b/5c6413f8bdede23be5e966366bb79d158d4b2ccb6465f9718f86cdb17c1b/isovar-1.0.9.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.9
2026-11-13T14:42:42,988   Found link https://files.pythonhosted.org/packages/77/93/1198731f9a82344e62c506aae7498e62ee7d66b47d9a41044449775d981a/isovar-1.0.10.tar.gz (from https://pypi.org/simple/isovar/), version: 1.0.10
2026-11-13T14:42:42,989   Found link https://files.pythonhosted.org/packages/c8/c4/bbc73d818113ef77f38866db48fef6fd04c82cdb90ec1a92415e98a7da3f/isovar-1.1.0.tar.gz (from https://pypi.org/simple/isovar/), version: 1.1.0
2026-11-13T14:42:42,990   Found link https://files.pythonhosted.org/packages/b5/1e/138d88128449d2753f828c169a45688e5d1c5b011544a83cdfa2e64af97a/isovar-1.1.1.tar.gz (from https://pypi.org/simple/isovar/), version: 1.1.1
2026-11-13T14:42:42,990   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/e5/35/3e24c2e9c31374a7d9a283598cdc15cc85082d1b59206016a8a2c09efc7c/isovar-1.3.0-py3-none-any.whl (from https://pypi.org/simple/isovar/)
2026-11-13T14:42:42,991   Found link https://files.pythonhosted.org/packages/83/be/38d44747eb1c3825a566651a8da85f85584069f1894eb7799fd2bf61a1ec/isovar-1.3.0.tar.gz (from https://pypi.org/simple/isovar/), version: 1.3.0
2026-11-13T14:42:42,991   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/2b/2e/3fbc2ce1f15635ff2d0d88fd6f730c15db30b31059de43ec8eed64fa36f9/isovar-1.4.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:42,992   Found link https://files.pythonhosted.org/packages/3f/f1/f4adc10fc650b60cc01f1d3101df6edde5169ec141a72dd60f32cc7eb938/isovar-1.4.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.0
2026-11-13T14:42:42,993   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/f9/85/b300ad76c791ce7d5eb06accf9a7d9f24f634637d7fc5e441b0cf1f96afa/isovar-1.4.1-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:42,994   Found link https://files.pythonhosted.org/packages/60/2f/928cba23685bc68c9ffeec0d44ff96995984000d9a6def21318812d19f23/isovar-1.4.1.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.1
2026-11-13T14:42:42,995   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/17/86/3361736a384ab2247ca528a2348fabfeabaa6c4463ecf28c0d3a40de71be/isovar-1.4.2-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:42,996   Found link https://files.pythonhosted.org/packages/a2/f6/8fbda26c9a1f2f41f20d8db7e728fb8801a92a1117c4178b8e3017d08918/isovar-1.4.2.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.2
2026-11-13T14:42:42,996   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/f2/fc/d3646435e77cfa4eef0be724a31fd83e79437990d83df475429aeab0564e/isovar-1.4.3-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:42,997   Found link https://files.pythonhosted.org/packages/19/ce/279e8f08372e8849172e3ec87fc089c70bf0431f154d997280a266077dc2/isovar-1.4.3.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.3
2026-11-13T14:42:42,998   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/ab/4e/bc718e6a78e78637176157a6b6e5617016d09f2db80600dc2e5b2afe53bc/isovar-1.4.4-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:42,999   Found link https://files.pythonhosted.org/packages/f7/26/95f0b4d23a436de0e1a3cb061cdad8ad22a704c069c88f5ae0ce6ccd4bcb/isovar-1.4.4.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.4
2026-11-13T14:42:42,999   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/f7/80/81c1c5df1febf045c98a1547851fdb3a0b3b92b579eeff83839a144dbe68/isovar-1.4.5-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:43,000   Found link https://files.pythonhosted.org/packages/44/1c/4dec1a588428119d26b2667a92cb41bcf2803a001229fda11970040fa20f/isovar-1.4.5.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.5
2026-11-13T14:42:43,001   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/66/65/a5b102914f586ff695750dbb827ef94e0176bddce2cd571700c9bec8b139/isovar-1.4.6-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:43,002   Found link https://files.pythonhosted.org/packages/fa/59/482a12362246dbf244ac190cd2768aaebc6e07ba8a237504cbca589841b9/isovar-1.4.6.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.6
2026-11-13T14:42:43,002   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/ba/b5/c1bd18b5366c10004e211bc4808da830682c0733eb74b405c07ceaa96d37/isovar-1.4.7-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:43,003   Found link https://files.pythonhosted.org/packages/0a/9e/6f427722575d49f3e339e3fb76ca11d831dcfb611a166dd0335215adc89c/isovar-1.4.7.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.7
2026-11-13T14:42:43,004   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/a0/b4/65ebf7d449bc8e9afb7821ce35e9afe72c003def3302998be1b4c7c01a9e/isovar-1.4.8-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:43,005   Found link https://files.pythonhosted.org/packages/a2/d4/f093bdaaa02d2e8fc4ea86420464b5494319999a5b5caa22f7ee3b4092b9/isovar-1.4.8.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.8
2026-11-13T14:42:43,006   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/cf/2e/80194c271082f9c50740fb62ea97761af06938b29b1286df20120503d2ad/isovar-1.4.9-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:43,007   Found link https://files.pythonhosted.org/packages/7a/1b/bfeac801a9180b1cf0de776783e0463b266694bdb0827e9232392f7b94f1/isovar-1.4.9.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.9
2026-11-13T14:42:43,007   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/96/12/94b6a4eb8baaa753e37fd657b62d817da629f0e53e3685d5c6ccac20637e/isovar-1.4.10-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
2026-11-13T14:42:43,008   Found link https://files.pythonhosted.org/packages/64/31/cee9d8c349e124cb70e40d539c8569e33bb464e43f36b123664b17c32901/isovar-1.4.10.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.4.10
2026-11-13T14:42:43,009   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/18/6a/a69049c5f32b88f9db17df55df567a1e5ce755a06b4cb619acb5dfc07ff7/isovar-1.4.11-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.9)
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2026-11-13T14:42:43,109   Found link https://files.pythonhosted.org/packages/65/90/b3efc0c1271d021350eddc1201254270db2c0fe7fb61cc79344313ca2d75/isovar-1.21.3.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.21.3
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2026-11-13T14:42:43,133   Found link https://files.pythonhosted.org/packages/45/d5/c1fdb8d640d0d7c14d61f3bfdd6ee0181657539c24128ff3039ab133a56d/isovar-1.24.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.24.0
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2026-11-13T14:42:43,228   Found link https://files.pythonhosted.org/packages/de/e8/f677d0a711b5493136650c7aca470f2a1f5e7183ac76fdc54befcce1bfc4/isovar-1.53.3.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.53.3
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2026-11-13T14:42:43,229   Found link https://files.pythonhosted.org/packages/6d/13/414d45e7d36ca7b76574e50d313fd46086d4804061d725e85e4c23e1fb29/isovar-1.53.4.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.9), version: 1.53.4
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2026-11-13T14:42:43,352   Found link https://files.pythonhosted.org/packages/c9/03/26134fe6da1619033c22dccc6569999fc8df178dd4a33def017cbf461a27/isovar-1.82.2.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.82.2
2026-11-13T14:42:43,353   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/ff/8c/2750cf29b2211645104f37d3bbb835189045b7607808df21f7bdc393ec3d/isovar-1.82.3-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,354   Found link https://files.pythonhosted.org/packages/28/a7/6fc8a5ec9564667e13f0838a311852bfee0e4714ca6d241b49f8ef690513/isovar-1.82.3.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.82.3
2026-11-13T14:42:43,355   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/b2/1f/468558a111f2ea2991dd5fd6978544fdff7f64e7a247439ac406d247dd05/isovar-1.82.4-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,355   Found link https://files.pythonhosted.org/packages/4e/41/b4d9cb2ba5db25996987cdc4ddb8de51b7552b275d54d31c11e812de47e3/isovar-1.82.4.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.82.4
2026-11-13T14:42:43,356   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/19/53/bad1407668a6bf635c9b40a43f3d0ed6de993cc2790d44d71871ca74f6d9/isovar-1.83.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,357   Found link https://files.pythonhosted.org/packages/fc/6e/37ff987c6457e447828b669954220e64668ec0615140d6effb758d11c803/isovar-1.83.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.83.0
2026-11-13T14:42:43,358   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/b3/42/3b4b6f886a04db840d3a28577257ff774d3466d0ba9f946b155024b4312d/isovar-1.84.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,359   Found link https://files.pythonhosted.org/packages/4c/4f/ae96b091484ae29bc5caa365c4fa23f4afd0d8208e0aaa22417df0d9dd53/isovar-1.84.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.84.0
2026-11-13T14:42:43,359   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/64/62/abff5ec4dcafc396bdef24c1a6ed683dbd10580727f7fc77316c16bf7db4/isovar-1.85.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,360   Found link https://files.pythonhosted.org/packages/11/a0/a49d393fc3ece00508dc793eaefcd241f1971ad5c6f9c9b073f01af1743b/isovar-1.85.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.85.0
2026-11-13T14:42:43,361   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/f1/a9/a53af76bb1d706f8889108eed30ba08657f657bc0f56be50baa315641b19/isovar-1.86.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,362   Found link https://files.pythonhosted.org/packages/99/10/5c5913c224b01cc0fe2fc15d3188ef3a1de96bd487242be388ff6913d9ff/isovar-1.86.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.86.0
2026-11-13T14:42:43,362   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/14/55/267a6f36a2cc9be6baf2bb971a467909836b89e18b5822c837390b6d6a60/isovar-1.87.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,363   Found link https://files.pythonhosted.org/packages/d3/2c/76384225a12ecc630541f464b952f65e7bd25770c2f086defe58dba39b47/isovar-1.87.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.87.0
2026-11-13T14:42:43,364   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/e2/c6/43c2bca3d98b4aef84b3edf75a79aa613b1d4dd9891890da5ec517074630/isovar-1.87.1-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,364   Found link https://files.pythonhosted.org/packages/62/9f/841d2a755edbfa7ba9f96c5c76cfae652d3c4de0d1444070454fe910c06a/isovar-1.87.1.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.87.1
2026-11-13T14:42:43,365   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/ca/83/c449f935994a04f08cce36cec9fda7a82516b7e4883f8e751c708f107c4b/isovar-1.88.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,366   Found link https://files.pythonhosted.org/packages/0b/2f/94e84785f5092dac8cd6754c56c5c0548066541f455517da9a1e2a23865a/isovar-1.88.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.88.0
2026-11-13T14:42:43,367   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/88/28/fe6bc7dd173f3fe18801c215bd1e66b49d1043e77aec26a46b612f62bfb7/isovar-1.88.1-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,367   Found link https://files.pythonhosted.org/packages/25/04/600c822a514c64674ac6f85985cd9a0545a578a2ed14c3dd4ee4955506ae/isovar-1.88.1.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.88.1
2026-11-13T14:42:43,368   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/75/47/0f66108ea315adcb38a56e8f5f4dbf772671a26376ef423e569153500281/isovar-1.89.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,369   Found link https://files.pythonhosted.org/packages/70/16/c3490bd619feff1649570dafeeacd3b6f0518a760e5029b5b11b0e15af05/isovar-1.89.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.89.0
2026-11-13T14:42:43,370   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/9b/51/1f7ea508cfdbcab5967043307d0fd4028fe83a6ab3faa0b8bfc80ad8e324/isovar-1.90.0-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,371   Found link https://files.pythonhosted.org/packages/f0/cb/6cca6fe3dec8ad655e142b15e29cb137b48a75869a8ef0bb1bd0c03e6db9/isovar-1.90.0.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.90.0
2026-11-13T14:42:43,372   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/68/98/36b17e117d717b0349b295238f736483b07b7c8be2ded61d62c94a52f867/isovar-1.90.1-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,372   Found link https://files.pythonhosted.org/packages/cf/58/9302c86bef79124d33dfa9282a142f960def0fbc87dc02949fa7801eb598/isovar-1.90.1.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.90.1
2026-11-13T14:42:43,373   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/aa/43/65cf6cd549b148c3a88d3a8c26b8e61df41541a6bd75d285cb3bf7cf6e52/isovar-1.90.2-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,374   Found link https://files.pythonhosted.org/packages/ee/0b/93d70e04fa8257dc225a006b088b7ea0872eebebe476daade5cabcce9e65/isovar-1.90.2.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.90.2
2026-11-13T14:42:43,374   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/d0/07/d51e5e9403667b72aca5a6ecea912e4d8f03281d0e50f75d71e3b90ad4a0/isovar-1.90.3-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,375   Found link https://files.pythonhosted.org/packages/3a/6e/aef6462191414e4dc3a0b957f80b501af684024c8a85e012a9b104e31a1b/isovar-1.90.3.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.90.3
2026-11-13T14:42:43,376   Skipping link: No binaries permitted for isovar: https://files.pythonhosted.org/packages/d7/f3/a89c84e190dbd7a7cd8656e9857299cd0303d6333e5798a94ed79d9923d6/isovar-1.90.4-py3-none-any.whl (from https://pypi.org/simple/isovar/) (requires-python:>=3.11)
2026-11-13T14:42:43,377   Found link https://files.pythonhosted.org/packages/67/8c/9b425573f605aabfe455911ecd6f34268da826c5b3ce14b6f4d5b66f88c3/isovar-1.90.4.tar.gz (from https://pypi.org/simple/isovar/) (requires-python:>=3.11), version: 1.90.4
2026-11-13T14:42:43,378 Fetching project page and analyzing links: https://www.piwheels.org/simple/isovar/
2026-11-13T14:42:43,379 Getting page https://www.piwheels.org/simple/isovar/
2026-11-13T14:42:43,380 Found index url https://www.piwheels.org/simple
2026-11-13T14:42:43,677 Fetched page https://www.piwheels.org/simple/isovar/ as text/html
2026-11-13T14:42:43,751   Skipping link: No binaries permitted for isovar: https://www.piwheels.org/simple/isovar/isovar-1.82.4-py3-none-any.whl#sha256=6b0afef24f114d2092fa601fb1c1cad6028c0b9db06a6d32e0cfd99eb70c1ce7 (from https://www.piwheels.org/simple/isovar/) (requires-python:>=3.11)
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2026-11-13T14:42:43,759   Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-1.75.2-py3-none-any.whl#sha256=9fbc7de5ae8a7ee1dca4e3bf46c4e561b598d143c616f48534327b817b326160 (from https://www.piwheels.org/simple/isovar/) (requires-python:>=3.11)
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2026-11-13T14:42:43,761   Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-1.74.1-py3-none-any.whl#sha256=7d5dbd39b4a4a23966a346f11ef85c82885095c4f9714747b03a1c380b5cd651 (from https://www.piwheels.org/simple/isovar/) (requires-python:>=3.11)
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2026-11-13T14:42:43,899   Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.6.1-py3-none-any.whl#sha256=a67ea479f0c73cc43fde0d35c8801f6ed3c81f062476dbaf39b5c410c0ba4b7d (from https://www.piwheels.org/simple/isovar/)
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2026-11-13T14:42:43,907 Skipping link: not a file: https://www.piwheels.org/simple/isovar/
2026-11-13T14:42:43,908 Skipping link: not a file: https://pypi.org/simple/isovar/
2026-11-13T14:42:43,961 Given no hashes to check 1 links for project 'isovar': discarding no candidates
2026-11-13T14:42:43,980 Collecting isovar==1.83.0
2026-11-13T14:42:43,983   Created temporary directory: /tmp/pip-unpack-97rwekmq
2026-11-13T14:42:44,220   Downloading isovar-1.83.0.tar.gz (12.7 MB)
2026-11-13T14:42:48,630   Added isovar==1.83.0 from https://files.pythonhosted.org/packages/fc/6e/37ff987c6457e447828b669954220e64668ec0615140d6effb758d11c803/isovar-1.83.0.tar.gz to build tracker '/tmp/pip-build-tracker-4c1kycdl'
2026-11-13T14:42:48,638   Created temporary directory: /tmp/pip-build-env-uec4pajs
2026-11-13T14:42:48,644   Installing build dependencies: started
2026-11-13T14:42:48,645   Running command pip subprocess to install build dependencies
2026-11-13T14:42:49,808   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-11-13T14:42:50,241   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-11-13T14:42:50,264   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-11-13T14:42:52,032   Collecting setuptools>=77
2026-11-13T14:42:52,033     Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata
2026-11-13T14:42:52,049     Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB)
2026-11-13T14:42:52,293   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB)
2026-11-13T14:42:52,392   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB)
2026-11-13T14:42:55,202   Installing collected packages: setuptools
2026-11-13T14:42:58,895   Successfully installed setuptools-84.2.1
2026-11-13T14:42:59,162   Installing build dependencies: finished with status 'done'
2026-11-13T14:42:59,170   Getting requirements to build wheel: started
2026-11-13T14:42:59,171   Running command Getting requirements to build wheel
2026-11-13T14:42:59,938   running egg_info
2026-11-13T14:42:59,944   writing isovar.egg-info/PKG-INFO
2026-11-13T14:42:59,948   writing dependency_links to isovar.egg-info/dependency_links.txt
2026-11-13T14:42:59,951   writing entry points to isovar.egg-info/entry_points.txt
2026-11-13T14:42:59,953   writing requirements to isovar.egg-info/requires.txt
2026-11-13T14:42:59,954   writing top-level names to isovar.egg-info/top_level.txt
2026-11-13T14:43:00,002   reading manifest file 'isovar.egg-info/SOURCES.txt'
2026-11-13T14:43:00,034   reading manifest template 'MANIFEST.in'
2026-11-13T14:43:00,127   adding license file 'LICENSE'
2026-11-13T14:43:00,157   writing manifest file 'isovar.egg-info/SOURCES.txt'
2026-11-13T14:43:00,255   Getting requirements to build wheel: finished with status 'done'
2026-11-13T14:43:00,259   Created temporary directory: /tmp/pip-modern-metadata-lbh_h11p
2026-11-13T14:43:00,262   Preparing metadata (pyproject.toml): started
2026-11-13T14:43:00,263   Running command Preparing metadata (pyproject.toml)
2026-11-13T14:43:00,954   running dist_info
2026-11-13T14:43:00,964   creating /tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info
2026-11-13T14:43:00,966   writing /tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info/PKG-INFO
2026-11-13T14:43:00,971   writing dependency_links to /tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info/dependency_links.txt
2026-11-13T14:43:00,974   writing entry points to /tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info/entry_points.txt
2026-11-13T14:43:00,976   writing requirements to /tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info/requires.txt
2026-11-13T14:43:00,977   writing top-level names to /tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info/top_level.txt
2026-11-13T14:43:00,979   writing manifest file '/tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info/SOURCES.txt'
2026-11-13T14:43:01,024   reading manifest file '/tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info/SOURCES.txt'
2026-11-13T14:43:01,025   reading manifest template 'MANIFEST.in'
2026-11-13T14:43:01,134   adding license file 'LICENSE'
2026-11-13T14:43:01,156   writing manifest file '/tmp/pip-modern-metadata-lbh_h11p/isovar.egg-info/SOURCES.txt'
2026-11-13T14:43:01,158   creating '/tmp/pip-modern-metadata-lbh_h11p/isovar-1.83.0.dist-info'
2026-11-13T14:43:01,287   Preparing metadata (pyproject.toml): finished with status 'done'
2026-11-13T14:43:01,292   Source in /tmp/pip-wheel-qzmojhav/isovar_53fa977331004ad09d31679b189292b2 has version 1.83.0, which satisfies requirement isovar==1.83.0 from https://files.pythonhosted.org/packages/fc/6e/37ff987c6457e447828b669954220e64668ec0615140d6effb758d11c803/isovar-1.83.0.tar.gz
2026-11-13T14:43:01,293   Removed isovar==1.83.0 from https://files.pythonhosted.org/packages/fc/6e/37ff987c6457e447828b669954220e64668ec0615140d6effb758d11c803/isovar-1.83.0.tar.gz from build tracker '/tmp/pip-build-tracker-4c1kycdl'
2026-11-13T14:43:01,299 Created temporary directory: /tmp/pip-unpack-1h47v5jr
2026-11-13T14:43:01,300 Building wheels for collected packages: isovar
2026-11-13T14:43:01,305   Created temporary directory: /tmp/pip-wheel-9v3ktd9j
2026-11-13T14:43:01,305   Destination directory: /tmp/pip-wheel-9v3ktd9j
2026-11-13T14:43:01,308   Building wheel for isovar (pyproject.toml): started
2026-11-13T14:43:01,309   Running command Building wheel for isovar (pyproject.toml)
2026-11-13T14:43:01,956   running bdist_wheel
2026-11-13T14:43:01,973   running build
2026-11-13T14:43:01,974   running build_py
2026-11-13T14:43:01,979   creating build/lib/isovar
2026-11-13T14:43:01,981   copying isovar/dataframe_helpers.py -> build/lib/isovar
2026-11-13T14:43:01,983   copying isovar/sv_rna_stream.py -> build/lib/isovar
2026-11-13T14:43:01,985   copying isovar/_audit_json.py -> build/lib/isovar
2026-11-13T14:43:01,988   copying isovar/antigen_targets.py -> build/lib/isovar
2026-11-13T14:43:01,990   copying isovar/sid_audit_bundle.py -> build/lib/isovar
2026-11-13T14:43:01,992   copying isovar/chimeric_alignment.py -> build/lib/isovar
2026-11-13T14:43:01,994   copying isovar/evidence_pdf.py -> build/lib/isovar
2026-11-13T14:43:01,997   copying isovar/read_lineage.py -> build/lib/isovar
2026-11-13T14:43:01,999   copying isovar/variant_path_report.py -> build/lib/isovar
2026-11-13T14:43:02,001   copying isovar/read_end_profiles.py -> build/lib/isovar
2026-11-13T14:43:02,003   copying isovar/sv_rna_orfs.py -> build/lib/isovar
2026-11-13T14:43:02,005   copying isovar/phasing_calibration.py -> build/lib/isovar
2026-11-13T14:43:02,007   copying isovar/rna_proteome.py -> build/lib/isovar
2026-11-13T14:43:02,010   copying isovar/transcript_assembly_edit.py -> build/lib/isovar
2026-11-13T14:43:02,011   copying isovar/default_parameters.py -> build/lib/isovar
2026-11-13T14:43:02,014   copying isovar/rna_library.py -> build/lib/isovar
2026-11-13T14:43:02,016   copying isovar/protein_comparison.py -> build/lib/isovar
2026-11-13T14:43:02,018   copying isovar/reference_coding_sequence_key.py -> build/lib/isovar
2026-11-13T14:43:02,020   copying isovar/sv_path_routing.py -> build/lib/isovar
2026-11-13T14:43:02,023   copying isovar/normal_sources.py -> build/lib/isovar
2026-11-13T14:43:02,025   copying isovar/audit_replay.py -> build/lib/isovar
2026-11-13T14:43:02,028   copying isovar/fusion.py -> build/lib/isovar
2026-11-13T14:43:02,030   copying isovar/allele_read.py -> build/lib/isovar
2026-11-13T14:43:02,032   copying isovar/allele_path_seeds.py -> build/lib/isovar
2026-11-13T14:43:02,034   copying isovar/antigen_reference.py -> build/lib/isovar
2026-11-13T14:43:02,037   copying isovar/common.py -> build/lib/isovar
2026-11-13T14:43:02,038   copying isovar/cell_reconstruction.py -> build/lib/isovar
2026-11-13T14:43:02,041   copying isovar/viral_sequences.py -> build/lib/isovar
2026-11-13T14:43:02,043   copying isovar/coding_interval_support.py -> build/lib/isovar
2026-11-13T14:43:02,045   copying isovar/isovar_result_provider.py -> build/lib/isovar
2026-11-13T14:43:02,047   copying isovar/reference_sequence_key.py -> build/lib/isovar
2026-11-13T14:43:02,049   copying isovar/cell_evidence.py -> build/lib/isovar
2026-11-13T14:43:02,051   copying isovar/_file_identity.py -> build/lib/isovar
2026-11-13T14:43:02,053   copying isovar/variant_sequence_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,056   copying isovar/effect_prediction.py -> build/lib/isovar
2026-11-13T14:43:02,058   copying isovar/orf_start.py -> build/lib/isovar
2026-11-13T14:43:02,060   copying isovar/rna_candidate_support.py -> build/lib/isovar
2026-11-13T14:43:02,062   copying isovar/orf_inclusion.py -> build/lib/isovar
2026-11-13T14:43:02,065   copying isovar/sv_rna_path_support.py -> build/lib/isovar
2026-11-13T14:43:02,067   copying isovar/read_metadata.py -> build/lib/isovar
2026-11-13T14:43:02,069   copying isovar/normal_regions.py -> build/lib/isovar
2026-11-13T14:43:02,071   copying isovar/aligned_reference_prefix.py -> build/lib/isovar
2026-11-13T14:43:02,073   copying isovar/genomic_intervals.py -> build/lib/isovar
2026-11-13T14:43:02,075   copying isovar/base_quality.py -> build/lib/isovar
2026-11-13T14:43:02,077   copying isovar/translation_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,079   copying isovar/main.py -> build/lib/isovar
2026-11-13T14:43:02,081   copying isovar/variant_sequence_creator.py -> build/lib/isovar
2026-11-13T14:43:02,083   copying isovar/logging.py -> build/lib/isovar
2026-11-13T14:43:02,085   copying isovar/read_identity.py -> build/lib/isovar
2026-11-13T14:43:02,088   copying isovar/__main__.py -> build/lib/isovar
2026-11-13T14:43:02,090   copying isovar/assembly.py -> build/lib/isovar
2026-11-13T14:43:02,092   copying isovar/transcript_edit_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,094   copying isovar/contig_resolution.py -> build/lib/isovar
2026-11-13T14:43:02,096   copying isovar/variant_orf.py -> build/lib/isovar
2026-11-13T14:43:02,098   copying isovar/antigen_evidence_pdf.py -> build/lib/isovar
2026-11-13T14:43:02,100   copying isovar/sv_source_preparation.py -> build/lib/isovar
2026-11-13T14:43:02,103   copying isovar/sv_rna_orf_export.py -> build/lib/isovar
2026-11-13T14:43:02,105   copying isovar/uorf_catalog.py -> build/lib/isovar
2026-11-13T14:43:02,107   copying isovar/antigen_isoforms.py -> build/lib/isovar
2026-11-13T14:43:02,109   copying isovar/variant_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,111   copying isovar/audit_bundle.py -> build/lib/isovar
2026-11-13T14:43:02,114   copying isovar/sv_rna_dense.py -> build/lib/isovar
2026-11-13T14:43:02,116   copying isovar/sv_rna.py -> build/lib/isovar
2026-11-13T14:43:02,121   copying isovar/_audit_json_reader.py -> build/lib/isovar
2026-11-13T14:43:02,123   copying isovar/sv_rna_audit.py -> build/lib/isovar
2026-11-13T14:43:02,125   copying isovar/alignment_score.py -> build/lib/isovar
2026-11-13T14:43:02,127   copying isovar/sid_data.py -> build/lib/isovar
2026-11-13T14:43:02,130   copying isovar/orf_annotation.py -> build/lib/isovar
2026-11-13T14:43:02,132   copying isovar/genetic_code.py -> build/lib/isovar
2026-11-13T14:43:02,134   copying isovar/cell_umi.py -> build/lib/isovar
2026-11-13T14:43:02,136   copying isovar/translation.py -> build/lib/isovar
2026-11-13T14:43:02,139   copying isovar/viral_coding.py -> build/lib/isovar
2026-11-13T14:43:02,141   copying isovar/rna_evidence.py -> build/lib/isovar
2026-11-13T14:43:02,143   copying isovar/variant_orf_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,145   copying isovar/__init__.py -> build/lib/isovar
2026-11-13T14:43:02,147   copying isovar/sv_rna_comparison.py -> build/lib/isovar
2026-11-13T14:43:02,149   copying isovar/sv_rna_assessment.py -> build/lib/isovar
2026-11-13T14:43:02,152   copying isovar/sv_rna_relations.py -> build/lib/isovar
2026-11-13T14:43:02,154   copying isovar/json_files.py -> build/lib/isovar
2026-11-13T14:43:02,156   copying isovar/proteome.py -> build/lib/isovar
2026-11-13T14:43:02,158   copying isovar/uorf_annotation.py -> build/lib/isovar
2026-11-13T14:43:02,160   copying isovar/variant_sequence.py -> build/lib/isovar
2026-11-13T14:43:02,162   copying isovar/protein_hypotheses.py -> build/lib/isovar
2026-11-13T14:43:02,165   copying isovar/known_variants.py -> build/lib/isovar
2026-11-13T14:43:02,167   copying isovar/protein_reporting.py -> build/lib/isovar
2026-11-13T14:43:02,169   copying isovar/sv_sources.py -> build/lib/isovar
2026-11-13T14:43:02,171   copying isovar/variant_rna_orfs.py -> build/lib/isovar
2026-11-13T14:43:02,174   copying isovar/mutant_transcript_source.py -> build/lib/isovar
2026-11-13T14:43:02,175   copying isovar/visualization.py -> build/lib/isovar
2026-11-13T14:43:02,178   copying isovar/allele_interpretations.py -> build/lib/isovar
2026-11-13T14:43:02,181   copying isovar/phase_group.py -> build/lib/isovar
2026-11-13T14:43:02,183   copying isovar/read_end_inference.py -> build/lib/isovar
2026-11-13T14:43:02,185   copying isovar/transcript_compatibility.py -> build/lib/isovar
2026-11-13T14:43:02,187   copying isovar/rna_reconstruction.py -> build/lib/isovar
2026-11-13T14:43:02,190   copying isovar/patient_background.py -> build/lib/isovar
2026-11-13T14:43:02,193   copying isovar/allele_read_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,195   copying isovar/initiation_context.py -> build/lib/isovar
2026-11-13T14:43:02,197   copying isovar/dataframe_builder.py -> build/lib/isovar
2026-11-13T14:43:02,199   copying isovar/cohort_pdf.py -> build/lib/isovar
2026-11-13T14:43:02,202   copying isovar/cohort.py -> build/lib/isovar
2026-11-13T14:43:02,205   copying isovar/reference_context.py -> build/lib/isovar
2026-11-13T14:43:02,207   copying isovar/antigen_report.py -> build/lib/isovar
2026-11-13T14:43:02,210   copying isovar/normal_evidence.py -> build/lib/isovar
2026-11-13T14:43:02,212   copying isovar/_audit_checkpoint.py -> build/lib/isovar
2026-11-13T14:43:02,214   copying isovar/read_phasing.py -> build/lib/isovar
2026-11-13T14:43:02,216   copying isovar/read_evidence.py -> build/lib/isovar
2026-11-13T14:43:02,218   copying isovar/isovar_result.py -> build/lib/isovar
2026-11-13T14:43:02,220   copying isovar/read_sequence_origin.py -> build/lib/isovar
2026-11-13T14:43:02,222   copying isovar/locus_read.py -> build/lib/isovar
2026-11-13T14:43:02,225   copying isovar/protein_window_comparison.py -> build/lib/isovar
2026-11-13T14:43:02,227   copying isovar/evidence_report.py -> build/lib/isovar
2026-11-13T14:43:02,229   copying isovar/dna.py -> build/lib/isovar
2026-11-13T14:43:02,230   copying isovar/protein_reference_comparison.py -> build/lib/isovar
2026-11-13T14:43:02,233   copying isovar/protein_sequence.py -> build/lib/isovar
2026-11-13T14:43:02,235   copying isovar/variant_read_assessment.py -> build/lib/isovar
2026-11-13T14:43:02,238   copying isovar/translation_key.py -> build/lib/isovar
2026-11-13T14:43:02,239   copying isovar/variant_rna_paths.py -> build/lib/isovar
2026-11-13T14:43:02,242   copying isovar/reference_context_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,243   copying isovar/sv_rna_reconciliation.py -> build/lib/isovar
2026-11-13T14:43:02,246   copying isovar/germline_evidence.py -> build/lib/isovar
2026-11-13T14:43:02,248   copying isovar/rna_path_linkage.py -> build/lib/isovar
2026-11-13T14:43:02,250   copying isovar/protein_sequence_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,252   copying isovar/transcript_path_frames.py -> build/lib/isovar
2026-11-13T14:43:02,254   copying isovar/value_object.py -> build/lib/isovar
2026-11-13T14:43:02,256   copying isovar/fusion_visualization.py -> build/lib/isovar
2026-11-13T14:43:02,259   copying isovar/isoform_quantification.py -> build/lib/isovar
2026-11-13T14:43:02,261   copying isovar/phasing.py -> build/lib/isovar
2026-11-13T14:43:02,263   copying isovar/filtering.py -> build/lib/isovar
2026-11-13T14:43:02,266   copying isovar/read_collector.py -> build/lib/isovar
2026-11-13T14:43:02,269   copying isovar/protein_sequence_creator.py -> build/lib/isovar
2026-11-13T14:43:02,271   copying isovar/string_helpers.py -> build/lib/isovar
2026-11-13T14:43:02,275   creating build/lib/isovar/cli
2026-11-13T14:43:02,276   copying isovar/cli/rna_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,278   copying isovar/cli/isovar_allele_reads.py -> build/lib/isovar/cli
2026-11-13T14:43:02,280   copying isovar/cli/isovar_antigen_report.py -> build/lib/isovar/cli
2026-11-13T14:43:02,282   copying isovar/cli/isovar_variant_reads.py -> build/lib/isovar/cli
2026-11-13T14:43:02,284   copying isovar/cli/isovar_sv_rna.py -> build/lib/isovar/cli
2026-11-13T14:43:02,286   copying isovar/cli/filter_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,288   copying isovar/cli/isovar_main.py -> build/lib/isovar/cli
2026-11-13T14:43:02,290   copying isovar/cli/isovar_fusion.py -> build/lib/isovar/cli
2026-11-13T14:43:02,292   copying isovar/cli/base_quality_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,293   copying isovar/cli/isovar_cohort.py -> build/lib/isovar/cli
2026-11-13T14:43:02,295   copying isovar/cli/isovar_normal_evidence.py -> build/lib/isovar/cli
2026-11-13T14:43:02,297   copying isovar/cli/output_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,299   copying isovar/cli/isovar_viral.py -> build/lib/isovar/cli
2026-11-13T14:43:02,301   copying isovar/cli/variant_sequences_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,303   copying isovar/cli/isovar_audit_bundle.py -> build/lib/isovar/cli
2026-11-13T14:43:02,305   copying isovar/cli/main_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,307   copying isovar/cli/__init__.py -> build/lib/isovar/cli
2026-11-13T14:43:02,309   copying isovar/cli/isovar_variant_rna_paths.py -> build/lib/isovar/cli
2026-11-13T14:43:02,311   copying isovar/cli/isovar_allele_interpretations.py -> build/lib/isovar/cli
2026-11-13T14:43:02,313   copying isovar/cli/isovar_uorf_evidence.py -> build/lib/isovar/cli
2026-11-13T14:43:02,315   copying isovar/cli/protein_sequence_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,317   copying isovar/cli/isovar_allele_counts.py -> build/lib/isovar/cli
2026-11-13T14:43:02,319   copying isovar/cli/isovar_protein_hypotheses.py -> build/lib/isovar/cli
2026-11-13T14:43:02,321   copying isovar/cli/isovar_isoforms.py -> build/lib/isovar/cli
2026-11-13T14:43:02,323   copying isovar/cli/isovar_reference_contexts.py -> build/lib/isovar/cli
2026-11-13T14:43:02,325   copying isovar/cli/isovar_proteome.py -> build/lib/isovar/cli
2026-11-13T14:43:02,327   copying isovar/cli/translation_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,329   copying isovar/cli/isovar_plot.py -> build/lib/isovar/cli
2026-11-13T14:43:02,331   copying isovar/cli/isovar_patient_background_pairs.py -> build/lib/isovar/cli
2026-11-13T14:43:02,333   copying isovar/cli/isovar_sv_source.py -> build/lib/isovar/cli
2026-11-13T14:43:02,334   copying isovar/cli/commands.py -> build/lib/isovar/cli
2026-11-13T14:43:02,337   copying isovar/cli/isovar_translations.py -> build/lib/isovar/cli
2026-11-13T14:43:02,339   copying isovar/cli/isovar_calibrate_phasing.py -> build/lib/isovar/cli
2026-11-13T14:43:02,341   copying isovar/cli/isovar_variant_sequences.py -> build/lib/isovar/cli
2026-11-13T14:43:02,343   copying isovar/cli/reference_context_args.py -> build/lib/isovar/cli
2026-11-13T14:43:02,345   copying isovar/cli/isovar_sv_audit.py -> build/lib/isovar/cli
2026-11-13T14:43:02,347   copying isovar/cli/isovar_evidence_report.py -> build/lib/isovar/cli
2026-11-13T14:43:02,349   copying isovar/cli/validation.py -> build/lib/isovar/cli
2026-11-13T14:43:02,352   copying isovar/cli/isovar_protein_sequences.py -> build/lib/isovar/cli
2026-11-13T14:43:02,355   running egg_info
2026-11-13T14:43:02,365   writing isovar.egg-info/PKG-INFO
2026-11-13T14:43:02,369   writing dependency_links to isovar.egg-info/dependency_links.txt
2026-11-13T14:43:02,372   writing entry points to isovar.egg-info/entry_points.txt
2026-11-13T14:43:02,374   writing requirements to isovar.egg-info/requires.txt
2026-11-13T14:43:02,375   writing top-level names to isovar.egg-info/top_level.txt
2026-11-13T14:43:02,413   reading manifest file 'isovar.egg-info/SOURCES.txt'
2026-11-13T14:43:02,445   reading manifest template 'MANIFEST.in'
2026-11-13T14:43:02,529   adding license file 'LICENSE'
2026-11-13T14:43:02,557   writing manifest file 'isovar.egg-info/SOURCES.txt'
2026-11-13T14:43:02,586   creating build/lib/isovar/data/sid-reads
2026-11-13T14:43:02,588   copying isovar/data/sid-reads/recipe.json -> build/lib/isovar/data/sid-reads
2026-11-13T14:43:02,650   copying isovar/data/sid-reads/acquisition.json -> build/lib/isovar/data/sid-reads
2026-11-13T14:43:02,652   copying isovar/data/sid-reads/manifest.json -> build/lib/isovar/data/sid-reads
2026-11-13T14:43:02,825   creating build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,826   copying isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,833   copying isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,836   copying isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,847   copying isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,856   copying isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,858   copying isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,862   copying isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,871   copying isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,876   copying isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,882   copying isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,889   copying isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,892   copying isovar/data/sid-reads/sources/60595081adfd6f6685795616.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,901   copying isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,903   copying isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,907   copying isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,910   copying isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,912   copying isovar/data/sid-reads/sources/c300dbf41837763346768069.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,915   copying isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,918   copying isovar/data/sid-reads/sources/60595081adfd6f6685795616.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,922   copying isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,925   copying isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,928   copying isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,931   copying isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,938   copying isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,941   copying isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,955   copying isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,958   copying isovar/data/sid-reads/sources/243e782bf97435eea70f232e.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,962   copying isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,968   copying isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,970   copying isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,974   copying isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,977   copying isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,983   copying isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,986   copying isovar/data/sid-reads/sources/1281e68167d4640a28783c86.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,993   copying isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,996   copying isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:02,999   copying isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,005   copying isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,008   copying isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,013   copying isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,036   copying isovar/data/sid-reads/sources/89110c2638e7281580818e44.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,039   copying isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,042   copying isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,056   copying isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,060   copying isovar/data/sid-reads/sources/196160e703256c72b0bc992a.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,062   copying isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,065   copying isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,074   copying isovar/data/sid-reads/sources/1281e68167d4640a28783c86.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,078   copying isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,081   copying isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,085   copying isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,089   copying isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,093   copying isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,095   copying isovar/data/sid-reads/sources/89110c2638e7281580818e44.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,102   copying isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,108   copying isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,111   copying isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,124   copying isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,127   copying isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,141   copying isovar/data/sid-reads/sources/196160e703256c72b0bc992a.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,144   copying isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,148   copying isovar/data/sid-reads/sources/265041205af7f5cc602c2974.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,151   copying isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,154   copying isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,167   copying isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,171   copying isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,178   copying isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,183   copying isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,186   copying isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,196   copying isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,203   copying isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,211   copying isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,214   copying isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,217   copying isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,243   copying isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,246   copying isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,286   copying isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,288   copying isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,292   copying isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,295   copying isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,298   copying isovar/data/sid-reads/sources/1281e68167d4640a28783c86.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,302   copying isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,304   copying isovar/data/sid-reads/sources/265041205af7f5cc602c2974.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,307   copying isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,310   copying isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,314   copying isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,317   copying isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,323   copying isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,327   copying isovar/data/sid-reads/sources/c300dbf41837763346768069.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,347   copying isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,353   copying isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,363   copying isovar/data/sid-reads/sources/196160e703256c72b0bc992a.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,366   copying isovar/data/sid-reads/sources/89110c2638e7281580818e44.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,369   copying isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,372   copying isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,385   copying isovar/data/sid-reads/sources/265041205af7f5cc602c2974.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,388   copying isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,391   copying isovar/data/sid-reads/sources/243e782bf97435eea70f232e.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,397   copying isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,400   copying isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,409   copying isovar/data/sid-reads/sources/243e782bf97435eea70f232e.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,414   copying isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,420   copying isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,423   copying isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,426   copying isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,429   copying isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,432   copying isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,434   copying isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,437   copying isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,443   copying isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,446   copying isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,448   copying isovar/data/sid-reads/sources/60595081adfd6f6685795616.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,451   copying isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,459   copying isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.bam.bai -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,462   copying isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,480   copying isovar/data/sid-reads/sources/c300dbf41837763346768069.bam -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,483   copying isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.header.json -> build/lib/isovar/data/sid-reads/sources
2026-11-13T14:43:03,494   creating build/lib/isovar/data/references
2026-11-13T14:43:03,495   copying isovar/data/references/gdc-grch38.d1.vd1.json -> build/lib/isovar/data/references
2026-11-13T14:43:03,501   copying isovar/data/references/gdc-grch38.d1.vd1-viruses.json -> build/lib/isovar/data/references
2026-11-13T14:43:03,787   installing to build/bdist.linux-armv7l/wheel
2026-11-13T14:43:03,788   running install
2026-11-13T14:43:03,811   running install_lib
2026-11-13T14:43:03,817   creating build/bdist.linux-armv7l/wheel
2026-11-13T14:43:03,821   creating build/bdist.linux-armv7l/wheel/isovar
2026-11-13T14:43:03,822   copying build/lib/isovar/dataframe_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:03,824   copying build/lib/isovar/sv_rna_stream.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:03,827   copying build/lib/isovar/_audit_json.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:03,830   copying build/lib/isovar/antigen_targets.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:03,833   copying build/lib/isovar/sid_audit_bundle.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:03,836   copying build/lib/isovar/chimeric_alignment.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:03,839   copying build/lib/isovar/evidence_pdf.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:03,842   copying build/lib/isovar/read_lineage.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:03,846   creating build/bdist.linux-armv7l/wheel/isovar/data
2026-11-13T14:43:03,848   creating build/bdist.linux-armv7l/wheel/isovar/data/sid-reads
2026-11-13T14:43:03,849   copying build/lib/isovar/data/sid-reads/recipe.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads
2026-11-13T14:43:03,946   creating build/bdist.linux-armv7l/wheel/isovar/data/sid-reads/sources
2026-11-13T14:43:03,947   copying build/lib/isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,953   copying build/lib/isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,955   copying build/lib/isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,965   copying build/lib/isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,976   copying build/lib/isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,978   copying build/lib/isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,982   copying build/lib/isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,989   copying build/lib/isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,993   copying build/lib/isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:03,999   copying build/lib/isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,005   copying build/lib/isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,008   copying build/lib/isovar/data/sid-reads/sources/60595081adfd6f6685795616.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,017   copying build/lib/isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,019   copying build/lib/isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,022   copying build/lib/isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,025   copying build/lib/isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,027   copying build/lib/isovar/data/sid-reads/sources/c300dbf41837763346768069.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,030   copying build/lib/isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,033   copying build/lib/isovar/data/sid-reads/sources/60595081adfd6f6685795616.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,038   copying build/lib/isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,040   copying build/lib/isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,042   copying build/lib/isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,045   copying build/lib/isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,050   copying build/lib/isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,052   copying build/lib/isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,063   copying build/lib/isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,066   copying build/lib/isovar/data/sid-reads/sources/243e782bf97435eea70f232e.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,069   copying build/lib/isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,074   copying build/lib/isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,076   copying build/lib/isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,080   copying build/lib/isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,082   copying build/lib/isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,088   copying build/lib/isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,090   copying build/lib/isovar/data/sid-reads/sources/1281e68167d4640a28783c86.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,097   copying build/lib/isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,100   copying build/lib/isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,104   copying build/lib/isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,110   copying build/lib/isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,113   copying build/lib/isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,118   copying build/lib/isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,139   copying build/lib/isovar/data/sid-reads/sources/89110c2638e7281580818e44.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,142   copying build/lib/isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,145   copying build/lib/isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,159   copying build/lib/isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,163   copying build/lib/isovar/data/sid-reads/sources/196160e703256c72b0bc992a.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,165   copying build/lib/isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,167   copying build/lib/isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,175   copying build/lib/isovar/data/sid-reads/sources/1281e68167d4640a28783c86.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,179   copying build/lib/isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,181   copying build/lib/isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,186   copying build/lib/isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,188   copying build/lib/isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,191   copying build/lib/isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,193   copying build/lib/isovar/data/sid-reads/sources/89110c2638e7281580818e44.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,200   copying build/lib/isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,205   copying build/lib/isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,208   copying build/lib/isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,221   copying build/lib/isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,223   copying build/lib/isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,234   copying build/lib/isovar/data/sid-reads/sources/196160e703256c72b0bc992a.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,237   copying build/lib/isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,240   copying build/lib/isovar/data/sid-reads/sources/265041205af7f5cc602c2974.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,242   copying build/lib/isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,245   copying build/lib/isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,254   copying build/lib/isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,257   copying build/lib/isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,263   copying build/lib/isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,268   copying build/lib/isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,271   copying build/lib/isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,281   copying build/lib/isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,288   copying build/lib/isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,296   copying build/lib/isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,299   copying build/lib/isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,302   copying build/lib/isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,322   copying build/lib/isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,325   copying build/lib/isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,367   copying build/lib/isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,380   copying build/lib/isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,383   copying build/lib/isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,386   copying build/lib/isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,389   copying build/lib/isovar/data/sid-reads/sources/1281e68167d4640a28783c86.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,392   copying build/lib/isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,394   copying build/lib/isovar/data/sid-reads/sources/265041205af7f5cc602c2974.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,397   copying build/lib/isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,399   copying build/lib/isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,403   copying build/lib/isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,406   copying build/lib/isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,411   copying build/lib/isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,414   copying build/lib/isovar/data/sid-reads/sources/c300dbf41837763346768069.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,424   copying build/lib/isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,430   copying build/lib/isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,439   copying build/lib/isovar/data/sid-reads/sources/196160e703256c72b0bc992a.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,441   copying build/lib/isovar/data/sid-reads/sources/89110c2638e7281580818e44.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,444   copying build/lib/isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,448   copying build/lib/isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,460   copying build/lib/isovar/data/sid-reads/sources/265041205af7f5cc602c2974.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,465   copying build/lib/isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,468   copying build/lib/isovar/data/sid-reads/sources/243e782bf97435eea70f232e.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,476   copying build/lib/isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,479   copying build/lib/isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,490   copying build/lib/isovar/data/sid-reads/sources/243e782bf97435eea70f232e.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,495   copying build/lib/isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,501   copying build/lib/isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,503   copying build/lib/isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,506   copying build/lib/isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,509   copying build/lib/isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,512   copying build/lib/isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,514   copying build/lib/isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,517   copying build/lib/isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,525   copying build/lib/isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,527   copying build/lib/isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,530   copying build/lib/isovar/data/sid-reads/sources/60595081adfd6f6685795616.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,532   copying build/lib/isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,539   copying build/lib/isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.bam.bai -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,542   copying build/lib/isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,561   copying build/lib/isovar/data/sid-reads/sources/c300dbf41837763346768069.bam -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,563   copying build/lib/isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.header.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads/sources
2026-11-13T14:43:04,578   copying build/lib/isovar/data/sid-reads/acquisition.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads
2026-11-13T14:43:04,580   copying build/lib/isovar/data/sid-reads/manifest.json -> build/bdist.linux-armv7l/wheel/./isovar/data/sid-reads
2026-11-13T14:43:04,802   creating build/bdist.linux-armv7l/wheel/isovar/data/references
2026-11-13T14:43:04,803   copying build/lib/isovar/data/references/gdc-grch38.d1.vd1.json -> build/bdist.linux-armv7l/wheel/./isovar/data/references
2026-11-13T14:43:04,809   copying build/lib/isovar/data/references/gdc-grch38.d1.vd1-viruses.json -> build/bdist.linux-armv7l/wheel/./isovar/data/references
2026-11-13T14:43:04,812   copying build/lib/isovar/variant_path_report.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,815   copying build/lib/isovar/read_end_profiles.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,817   copying build/lib/isovar/sv_rna_orfs.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,819   copying build/lib/isovar/phasing_calibration.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,821   copying build/lib/isovar/rna_proteome.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,823   copying build/lib/isovar/transcript_assembly_edit.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,825   copying build/lib/isovar/default_parameters.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,828   copying build/lib/isovar/rna_library.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,830   copying build/lib/isovar/protein_comparison.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,832   copying build/lib/isovar/reference_coding_sequence_key.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,835   copying build/lib/isovar/sv_path_routing.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,837   copying build/lib/isovar/normal_sources.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,840   copying build/lib/isovar/audit_replay.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,842   copying build/lib/isovar/fusion.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,845   copying build/lib/isovar/allele_read.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,847   copying build/lib/isovar/allele_path_seeds.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,849   copying build/lib/isovar/antigen_reference.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,852   copying build/lib/isovar/common.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,854   copying build/lib/isovar/cell_reconstruction.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,856   copying build/lib/isovar/viral_sequences.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,859   copying build/lib/isovar/coding_interval_support.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,860   copying build/lib/isovar/isovar_result_provider.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,862   copying build/lib/isovar/reference_sequence_key.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,864   copying build/lib/isovar/cell_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,867   copying build/lib/isovar/_file_identity.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,868   copying build/lib/isovar/variant_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,871   copying build/lib/isovar/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,873   copying build/lib/isovar/orf_start.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,875   copying build/lib/isovar/rna_candidate_support.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,877   copying build/lib/isovar/orf_inclusion.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,879   copying build/lib/isovar/sv_rna_path_support.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,881   copying build/lib/isovar/read_metadata.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,883   copying build/lib/isovar/normal_regions.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,885   copying build/lib/isovar/aligned_reference_prefix.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,887   copying build/lib/isovar/genomic_intervals.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,888   copying build/lib/isovar/base_quality.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,890   copying build/lib/isovar/translation_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,892   copying build/lib/isovar/main.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,894   copying build/lib/isovar/variant_sequence_creator.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,897   copying build/lib/isovar/logging.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,898   copying build/lib/isovar/read_identity.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,901   copying build/lib/isovar/__main__.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,902   copying build/lib/isovar/assembly.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,905   copying build/lib/isovar/transcript_edit_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,907   copying build/lib/isovar/contig_resolution.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,909   copying build/lib/isovar/variant_orf.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,912   copying build/lib/isovar/antigen_evidence_pdf.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,914   copying build/lib/isovar/sv_source_preparation.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,916   copying build/lib/isovar/sv_rna_orf_export.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,919   copying build/lib/isovar/uorf_catalog.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,921   copying build/lib/isovar/antigen_isoforms.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,923   copying build/lib/isovar/variant_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,925   copying build/lib/isovar/audit_bundle.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,928   copying build/lib/isovar/sv_rna_dense.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,931   copying build/lib/isovar/sv_rna.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,935   copying build/lib/isovar/_audit_json_reader.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,937   copying build/lib/isovar/sv_rna_audit.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,940   copying build/lib/isovar/alignment_score.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,942   copying build/lib/isovar/sid_data.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,944   copying build/lib/isovar/orf_annotation.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,947   copying build/lib/isovar/genetic_code.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,949   copying build/lib/isovar/cell_umi.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,951   copying build/lib/isovar/translation.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,953   copying build/lib/isovar/viral_coding.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,955   copying build/lib/isovar/rna_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,957   copying build/lib/isovar/variant_orf_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,960   copying build/lib/isovar/__init__.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,962   copying build/lib/isovar/sv_rna_comparison.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,964   copying build/lib/isovar/sv_rna_assessment.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,967   copying build/lib/isovar/sv_rna_relations.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,968   copying build/lib/isovar/json_files.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,970   copying build/lib/isovar/proteome.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,972   copying build/lib/isovar/uorf_annotation.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,974   copying build/lib/isovar/variant_sequence.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,977   copying build/lib/isovar/protein_hypotheses.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,979   copying build/lib/isovar/known_variants.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,981   copying build/lib/isovar/protein_reporting.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,983   copying build/lib/isovar/sv_sources.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,985   copying build/lib/isovar/variant_rna_orfs.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,987   copying build/lib/isovar/mutant_transcript_source.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,989   copying build/lib/isovar/visualization.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,992   copying build/lib/isovar/allele_interpretations.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,994   copying build/lib/isovar/phase_group.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,996   copying build/lib/isovar/read_end_inference.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:04,999   copying build/lib/isovar/transcript_compatibility.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,001   copying build/lib/isovar/rna_reconstruction.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,003   copying build/lib/isovar/patient_background.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,006   copying build/lib/isovar/allele_read_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,008   copying build/lib/isovar/initiation_context.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,010   copying build/lib/isovar/dataframe_builder.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,012   copying build/lib/isovar/cohort_pdf.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,015   copying build/lib/isovar/cohort.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,018   copying build/lib/isovar/reference_context.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,021   creating build/bdist.linux-armv7l/wheel/isovar/cli
2026-11-13T14:43:05,022   copying build/lib/isovar/cli/rna_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,025   copying build/lib/isovar/cli/isovar_allele_reads.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,027   copying build/lib/isovar/cli/isovar_antigen_report.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,029   copying build/lib/isovar/cli/isovar_variant_reads.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,031   copying build/lib/isovar/cli/isovar_sv_rna.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,033   copying build/lib/isovar/cli/filter_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,034   copying build/lib/isovar/cli/isovar_main.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,036   copying build/lib/isovar/cli/isovar_fusion.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,038   copying build/lib/isovar/cli/base_quality_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,039   copying build/lib/isovar/cli/isovar_cohort.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,041   copying build/lib/isovar/cli/isovar_normal_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,043   copying build/lib/isovar/cli/output_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,044   copying build/lib/isovar/cli/isovar_viral.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,046   copying build/lib/isovar/cli/variant_sequences_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,048   copying build/lib/isovar/cli/isovar_audit_bundle.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,050   copying build/lib/isovar/cli/main_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,052   copying build/lib/isovar/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,054   copying build/lib/isovar/cli/isovar_variant_rna_paths.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,056   copying build/lib/isovar/cli/isovar_allele_interpretations.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,058   copying build/lib/isovar/cli/isovar_uorf_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,059   copying build/lib/isovar/cli/protein_sequence_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,061   copying build/lib/isovar/cli/isovar_allele_counts.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,063   copying build/lib/isovar/cli/isovar_protein_hypotheses.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,065   copying build/lib/isovar/cli/isovar_isoforms.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,068   copying build/lib/isovar/cli/isovar_reference_contexts.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,069   copying build/lib/isovar/cli/isovar_proteome.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,071   copying build/lib/isovar/cli/translation_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,073   copying build/lib/isovar/cli/isovar_plot.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,076   copying build/lib/isovar/cli/isovar_patient_background_pairs.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,078   copying build/lib/isovar/cli/isovar_sv_source.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,080   copying build/lib/isovar/cli/commands.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,082   copying build/lib/isovar/cli/isovar_translations.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,084   copying build/lib/isovar/cli/isovar_calibrate_phasing.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,086   copying build/lib/isovar/cli/isovar_variant_sequences.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,088   copying build/lib/isovar/cli/reference_context_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,090   copying build/lib/isovar/cli/isovar_sv_audit.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,092   copying build/lib/isovar/cli/isovar_evidence_report.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,094   copying build/lib/isovar/cli/validation.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,097   copying build/lib/isovar/cli/isovar_protein_sequences.py -> build/bdist.linux-armv7l/wheel/./isovar/cli
2026-11-13T14:43:05,099   copying build/lib/isovar/antigen_report.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,101   copying build/lib/isovar/normal_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,103   copying build/lib/isovar/_audit_checkpoint.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,105   copying build/lib/isovar/read_phasing.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,107   copying build/lib/isovar/read_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,109   copying build/lib/isovar/isovar_result.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,112   copying build/lib/isovar/read_sequence_origin.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,114   copying build/lib/isovar/locus_read.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,117   copying build/lib/isovar/protein_window_comparison.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,119   copying build/lib/isovar/evidence_report.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,121   copying build/lib/isovar/dna.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,123   copying build/lib/isovar/protein_reference_comparison.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,125   copying build/lib/isovar/protein_sequence.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,128   copying build/lib/isovar/variant_read_assessment.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,130   copying build/lib/isovar/translation_key.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,131   copying build/lib/isovar/variant_rna_paths.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,134   copying build/lib/isovar/reference_context_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,136   copying build/lib/isovar/sv_rna_reconciliation.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,138   copying build/lib/isovar/germline_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,140   copying build/lib/isovar/rna_path_linkage.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,142   copying build/lib/isovar/protein_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,144   copying build/lib/isovar/transcript_path_frames.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,147   copying build/lib/isovar/value_object.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,149   copying build/lib/isovar/fusion_visualization.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,151   copying build/lib/isovar/isoform_quantification.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,153   copying build/lib/isovar/phasing.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,156   copying build/lib/isovar/filtering.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,158   copying build/lib/isovar/read_collector.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,161   copying build/lib/isovar/protein_sequence_creator.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,163   copying build/lib/isovar/string_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar
2026-11-13T14:43:05,165   running install_egg_info
2026-11-13T14:43:05,170   Copying isovar.egg-info to build/bdist.linux-armv7l/wheel/./isovar-1.83.0-py3.11.egg-info
2026-11-13T14:43:05,182   running install_scripts
2026-11-13T14:43:05,193   creating build/bdist.linux-armv7l/wheel/isovar-1.83.0.dist-info/WHEEL
2026-11-13T14:43:05,196   creating '/tmp/pip-wheel-9v3ktd9j/.tmp-g9jpvt6u/isovar-1.83.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-11-13T14:43:05,201   adding 'isovar/__init__.py'
2026-11-13T14:43:05,202   adding 'isovar/__main__.py'
2026-11-13T14:43:05,203   adding 'isovar/_audit_checkpoint.py'
2026-11-13T14:43:05,205   adding 'isovar/_audit_json.py'
2026-11-13T14:43:05,207   adding 'isovar/_audit_json_reader.py'
2026-11-13T14:43:05,208   adding 'isovar/_file_identity.py'
2026-11-13T14:43:05,210   adding 'isovar/aligned_reference_prefix.py'
2026-11-13T14:43:05,211   adding 'isovar/alignment_score.py'
2026-11-13T14:43:05,214   adding 'isovar/allele_interpretations.py'
2026-11-13T14:43:05,216   adding 'isovar/allele_path_seeds.py'
2026-11-13T14:43:05,218   adding 'isovar/allele_read.py'
2026-11-13T14:43:05,219   adding 'isovar/allele_read_helpers.py'
2026-11-13T14:43:05,221   adding 'isovar/antigen_evidence_pdf.py'
2026-11-13T14:43:05,223   adding 'isovar/antigen_isoforms.py'
2026-11-13T14:43:05,226   adding 'isovar/antigen_reference.py'
2026-11-13T14:43:05,227   adding 'isovar/antigen_report.py'
2026-11-13T14:43:05,229   adding 'isovar/antigen_targets.py'
2026-11-13T14:43:05,231   adding 'isovar/assembly.py'
2026-11-13T14:43:05,234   adding 'isovar/audit_bundle.py'
2026-11-13T14:43:05,236   adding 'isovar/audit_replay.py'
2026-11-13T14:43:05,237   adding 'isovar/base_quality.py'
2026-11-13T14:43:05,239   adding 'isovar/cell_evidence.py'
2026-11-13T14:43:05,241   adding 'isovar/cell_reconstruction.py'
2026-11-13T14:43:05,243   adding 'isovar/cell_umi.py'
2026-11-13T14:43:05,245   adding 'isovar/chimeric_alignment.py'
2026-11-13T14:43:05,246   adding 'isovar/coding_interval_support.py'
2026-11-13T14:43:05,252   adding 'isovar/cohort.py'
2026-11-13T14:43:05,260   adding 'isovar/cohort_pdf.py'
2026-11-13T14:43:05,262   adding 'isovar/common.py'
2026-11-13T14:43:05,263   adding 'isovar/contig_resolution.py'
2026-11-13T14:43:05,265   adding 'isovar/dataframe_builder.py'
2026-11-13T14:43:05,267   adding 'isovar/dataframe_helpers.py'
2026-11-13T14:43:05,269   adding 'isovar/default_parameters.py'
2026-11-13T14:43:05,270   adding 'isovar/dna.py'
2026-11-13T14:43:05,272   adding 'isovar/effect_prediction.py'
2026-11-13T14:43:05,274   adding 'isovar/evidence_pdf.py'
2026-11-13T14:43:05,276   adding 'isovar/evidence_report.py'
2026-11-13T14:43:05,278   adding 'isovar/filtering.py'
2026-11-13T14:43:05,281   adding 'isovar/fusion.py'
2026-11-13T14:43:05,283   adding 'isovar/fusion_visualization.py'
2026-11-13T14:43:05,285   adding 'isovar/genetic_code.py'
2026-11-13T14:43:05,286   adding 'isovar/genomic_intervals.py'
2026-11-13T14:43:05,288   adding 'isovar/germline_evidence.py'
2026-11-13T14:43:05,290   adding 'isovar/initiation_context.py'
2026-11-13T14:43:05,291   adding 'isovar/isoform_quantification.py'
2026-11-13T14:43:05,296   adding 'isovar/isovar_result.py'
2026-11-13T14:43:05,297   adding 'isovar/isovar_result_provider.py'
2026-11-13T14:43:05,299   adding 'isovar/json_files.py'
2026-11-13T14:43:05,300   adding 'isovar/known_variants.py'
2026-11-13T14:43:05,302   adding 'isovar/locus_read.py'
2026-11-13T14:43:05,303   adding 'isovar/logging.py'
2026-11-13T14:43:05,305   adding 'isovar/main.py'
2026-11-13T14:43:05,307   adding 'isovar/mutant_transcript_source.py'
2026-11-13T14:43:05,309   adding 'isovar/normal_evidence.py'
2026-11-13T14:43:05,310   adding 'isovar/normal_regions.py'
2026-11-13T14:43:05,313   adding 'isovar/normal_sources.py'
2026-11-13T14:43:05,315   adding 'isovar/orf_annotation.py'
2026-11-13T14:43:05,317   adding 'isovar/orf_inclusion.py'
2026-11-13T14:43:05,319   adding 'isovar/orf_start.py'
2026-11-13T14:43:05,321   adding 'isovar/patient_background.py'
2026-11-13T14:43:05,322   adding 'isovar/phase_group.py'
2026-11-13T14:43:05,325   adding 'isovar/phasing.py'
2026-11-13T14:43:05,327   adding 'isovar/phasing_calibration.py'
2026-11-13T14:43:05,329   adding 'isovar/protein_comparison.py'
2026-11-13T14:43:05,332   adding 'isovar/protein_hypotheses.py'
2026-11-13T14:43:05,334   adding 'isovar/protein_reference_comparison.py'
2026-11-13T14:43:05,335   adding 'isovar/protein_reporting.py'
2026-11-13T14:43:05,338   adding 'isovar/protein_sequence.py'
2026-11-13T14:43:05,341   adding 'isovar/protein_sequence_creator.py'
2026-11-13T14:43:05,343   adding 'isovar/protein_sequence_helpers.py'
2026-11-13T14:43:05,344   adding 'isovar/protein_window_comparison.py'
2026-11-13T14:43:05,346   adding 'isovar/proteome.py'
2026-11-13T14:43:05,353   adding 'isovar/read_collector.py'
2026-11-13T14:43:05,356   adding 'isovar/read_end_inference.py'
2026-11-13T14:43:05,358   adding 'isovar/read_end_profiles.py'
2026-11-13T14:43:05,360   adding 'isovar/read_evidence.py'
2026-11-13T14:43:05,361   adding 'isovar/read_identity.py'
2026-11-13T14:43:05,363   adding 'isovar/read_lineage.py'
2026-11-13T14:43:05,364   adding 'isovar/read_metadata.py'
2026-11-13T14:43:05,366   adding 'isovar/read_phasing.py'
2026-11-13T14:43:05,368   adding 'isovar/read_sequence_origin.py'
2026-11-13T14:43:05,370   adding 'isovar/reference_coding_sequence_key.py'
2026-11-13T14:43:05,371   adding 'isovar/reference_context.py'
2026-11-13T14:43:05,373   adding 'isovar/reference_context_helpers.py'
2026-11-13T14:43:05,374   adding 'isovar/reference_sequence_key.py'
2026-11-13T14:43:05,377   adding 'isovar/rna_candidate_support.py'
2026-11-13T14:43:05,378   adding 'isovar/rna_evidence.py'
2026-11-13T14:43:05,381   adding 'isovar/rna_library.py'
2026-11-13T14:43:05,383   adding 'isovar/rna_path_linkage.py'
2026-11-13T14:43:05,385   adding 'isovar/rna_proteome.py'
2026-11-13T14:43:05,388   adding 'isovar/rna_reconstruction.py'
2026-11-13T14:43:05,390   adding 'isovar/sid_audit_bundle.py'
2026-11-13T14:43:05,393   adding 'isovar/sid_data.py'
2026-11-13T14:43:05,394   adding 'isovar/string_helpers.py'
2026-11-13T14:43:05,396   adding 'isovar/sv_path_routing.py'
2026-11-13T14:43:05,412   adding 'isovar/sv_rna.py'
2026-11-13T14:43:05,417   adding 'isovar/sv_rna_assessment.py'
2026-11-13T14:43:05,420   adding 'isovar/sv_rna_audit.py'
2026-11-13T14:43:05,421   adding 'isovar/sv_rna_comparison.py'
2026-11-13T14:43:05,425   adding 'isovar/sv_rna_dense.py'
2026-11-13T14:43:05,428   adding 'isovar/sv_rna_orf_export.py'
2026-11-13T14:43:05,430   adding 'isovar/sv_rna_orfs.py'
2026-11-13T14:43:05,432   adding 'isovar/sv_rna_path_support.py'
2026-11-13T14:43:05,433   adding 'isovar/sv_rna_reconciliation.py'
2026-11-13T14:43:05,435   adding 'isovar/sv_rna_relations.py'
2026-11-13T14:43:05,437   adding 'isovar/sv_rna_stream.py'
2026-11-13T14:43:05,438   adding 'isovar/sv_source_preparation.py'
2026-11-13T14:43:05,441   adding 'isovar/sv_sources.py'
2026-11-13T14:43:05,442   adding 'isovar/transcript_assembly_edit.py'
2026-11-13T14:43:05,444   adding 'isovar/transcript_compatibility.py'
2026-11-13T14:43:05,447   adding 'isovar/transcript_edit_helpers.py'
2026-11-13T14:43:05,451   adding 'isovar/transcript_path_frames.py'
2026-11-13T14:43:05,453   adding 'isovar/translation.py'
2026-11-13T14:43:05,455   adding 'isovar/translation_helpers.py'
2026-11-13T14:43:05,456   adding 'isovar/translation_key.py'
2026-11-13T14:43:05,458   adding 'isovar/uorf_annotation.py'
2026-11-13T14:43:05,459   adding 'isovar/uorf_catalog.py'
2026-11-13T14:43:05,461   adding 'isovar/value_object.py'
2026-11-13T14:43:05,464   adding 'isovar/variant_helpers.py'
2026-11-13T14:43:05,466   adding 'isovar/variant_orf.py'
2026-11-13T14:43:05,468   adding 'isovar/variant_orf_helpers.py'
2026-11-13T14:43:05,471   adding 'isovar/variant_path_report.py'
2026-11-13T14:43:05,473   adding 'isovar/variant_read_assessment.py'
2026-11-13T14:43:05,477   adding 'isovar/variant_rna_orfs.py'
2026-11-13T14:43:05,481   adding 'isovar/variant_rna_paths.py'
2026-11-13T14:43:05,484   adding 'isovar/variant_sequence.py'
2026-11-13T14:43:05,486   adding 'isovar/variant_sequence_creator.py'
2026-11-13T14:43:05,489   adding 'isovar/variant_sequence_helpers.py'
2026-11-13T14:43:05,491   adding 'isovar/viral_coding.py'
2026-11-13T14:43:05,494   adding 'isovar/viral_sequences.py'
2026-11-13T14:43:05,501   adding 'isovar/visualization.py'
2026-11-13T14:43:05,504   adding 'isovar/cli/__init__.py'
2026-11-13T14:43:05,506   adding 'isovar/cli/base_quality_args.py'
2026-11-13T14:43:05,508   adding 'isovar/cli/commands.py'
2026-11-13T14:43:05,510   adding 'isovar/cli/filter_args.py'
2026-11-13T14:43:05,511   adding 'isovar/cli/isovar_allele_counts.py'
2026-11-13T14:43:05,513   adding 'isovar/cli/isovar_allele_interpretations.py'
2026-11-13T14:43:05,514   adding 'isovar/cli/isovar_allele_reads.py'
2026-11-13T14:43:05,516   adding 'isovar/cli/isovar_antigen_report.py'
2026-11-13T14:43:05,518   adding 'isovar/cli/isovar_audit_bundle.py'
2026-11-13T14:43:05,520   adding 'isovar/cli/isovar_calibrate_phasing.py'
2026-11-13T14:43:05,522   adding 'isovar/cli/isovar_cohort.py'
2026-11-13T14:43:05,525   adding 'isovar/cli/isovar_evidence_report.py'
2026-11-13T14:43:05,527   adding 'isovar/cli/isovar_fusion.py'
2026-11-13T14:43:05,529   adding 'isovar/cli/isovar_isoforms.py'
2026-11-13T14:43:05,530   adding 'isovar/cli/isovar_main.py'
2026-11-13T14:43:05,532   adding 'isovar/cli/isovar_normal_evidence.py'
2026-11-13T14:43:05,533   adding 'isovar/cli/isovar_patient_background_pairs.py'
2026-11-13T14:43:05,535   adding 'isovar/cli/isovar_plot.py'
2026-11-13T14:43:05,537   adding 'isovar/cli/isovar_protein_hypotheses.py'
2026-11-13T14:43:05,539   adding 'isovar/cli/isovar_protein_sequences.py'
2026-11-13T14:43:05,540   adding 'isovar/cli/isovar_proteome.py'
2026-11-13T14:43:05,542   adding 'isovar/cli/isovar_reference_contexts.py'
2026-11-13T14:43:05,543   adding 'isovar/cli/isovar_sv_audit.py'
2026-11-13T14:43:05,545   adding 'isovar/cli/isovar_sv_rna.py'
2026-11-13T14:43:05,546   adding 'isovar/cli/isovar_sv_source.py'
2026-11-13T14:43:05,547   adding 'isovar/cli/isovar_translations.py'
2026-11-13T14:43:05,548   adding 'isovar/cli/isovar_uorf_evidence.py'
2026-11-13T14:43:05,550   adding 'isovar/cli/isovar_variant_reads.py'
2026-11-13T14:43:05,551   adding 'isovar/cli/isovar_variant_rna_paths.py'
2026-11-13T14:43:05,552   adding 'isovar/cli/isovar_variant_sequences.py'
2026-11-13T14:43:05,554   adding 'isovar/cli/isovar_viral.py'
2026-11-13T14:43:05,555   adding 'isovar/cli/main_args.py'
2026-11-13T14:43:05,557   adding 'isovar/cli/output_args.py'
2026-11-13T14:43:05,558   adding 'isovar/cli/protein_sequence_args.py'
2026-11-13T14:43:05,559   adding 'isovar/cli/reference_context_args.py'
2026-11-13T14:43:05,561   adding 'isovar/cli/rna_args.py'
2026-11-13T14:43:05,563   adding 'isovar/cli/translation_args.py'
2026-11-13T14:43:05,565   adding 'isovar/cli/validation.py'
2026-11-13T14:43:05,566   adding 'isovar/cli/variant_sequences_args.py'
2026-11-13T14:43:05,570   adding 'isovar/data/references/gdc-grch38.d1.vd1-viruses.json'
2026-11-13T14:43:05,594   adding 'isovar/data/references/gdc-grch38.d1.vd1.json'
2026-11-13T14:43:05,598   adding 'isovar/data/sid-reads/acquisition.json'
2026-11-13T14:43:06,623   adding 'isovar/data/sid-reads/manifest.json'
2026-11-13T14:43:07,127   adding 'isovar/data/sid-reads/recipe.json'
2026-11-13T14:43:07,168   adding 'isovar/data/sid-reads/sources/1281e68167d4640a28783c86.bam'
2026-11-13T14:43:07,170   adding 'isovar/data/sid-reads/sources/1281e68167d4640a28783c86.bam.bai'
2026-11-13T14:43:07,183   adding 'isovar/data/sid-reads/sources/1281e68167d4640a28783c86.header.json'
2026-11-13T14:43:07,188   adding 'isovar/data/sid-reads/sources/196160e703256c72b0bc992a.bam'
2026-11-13T14:43:07,190   adding 'isovar/data/sid-reads/sources/196160e703256c72b0bc992a.bam.bai'
2026-11-13T14:43:07,191   adding 'isovar/data/sid-reads/sources/196160e703256c72b0bc992a.header.json'
2026-11-13T14:43:07,216   adding 'isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.bam'
2026-11-13T14:43:07,221   adding 'isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.bam.bai'
2026-11-13T14:43:07,311   adding 'isovar/data/sid-reads/sources/1a15d327795549218ce7bc0c.header.json'
2026-11-13T14:43:07,339   adding 'isovar/data/sid-reads/sources/243e782bf97435eea70f232e.bam'
2026-11-13T14:43:07,344   adding 'isovar/data/sid-reads/sources/243e782bf97435eea70f232e.bam.bai'
2026-11-13T14:43:07,356   adding 'isovar/data/sid-reads/sources/243e782bf97435eea70f232e.header.json'
2026-11-13T14:43:07,360   adding 'isovar/data/sid-reads/sources/265041205af7f5cc602c2974.bam'
2026-11-13T14:43:07,362   adding 'isovar/data/sid-reads/sources/265041205af7f5cc602c2974.bam.bai'
2026-11-13T14:43:07,364   adding 'isovar/data/sid-reads/sources/265041205af7f5cc602c2974.header.json'
2026-11-13T14:43:07,369   adding 'isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.bam'
2026-11-13T14:43:07,372   adding 'isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.bam.bai'
2026-11-13T14:43:07,385   adding 'isovar/data/sid-reads/sources/267b188d2a83878d8f3111cd.header.json'
2026-11-13T14:43:07,392   adding 'isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.bam'
2026-11-13T14:43:07,394   adding 'isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.bam.bai'
2026-11-13T14:43:07,395   adding 'isovar/data/sid-reads/sources/2e483cace99a132ded3c587d.header.json'
2026-11-13T14:43:07,414   adding 'isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.bam'
2026-11-13T14:43:07,427   adding 'isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.bam.bai'
2026-11-13T14:43:07,439   adding 'isovar/data/sid-reads/sources/2fbe9621deba29303b76d5ec.header.json'
2026-11-13T14:43:07,446   adding 'isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.bam'
2026-11-13T14:43:07,448   adding 'isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.bam.bai'
2026-11-13T14:43:07,450   adding 'isovar/data/sid-reads/sources/5fa9b1916c9e42ed2128c9b3.header.json'
2026-11-13T14:43:07,464   adding 'isovar/data/sid-reads/sources/60595081adfd6f6685795616.bam'
2026-11-13T14:43:07,473   adding 'isovar/data/sid-reads/sources/60595081adfd6f6685795616.bam.bai'
2026-11-13T14:43:07,478   adding 'isovar/data/sid-reads/sources/60595081adfd6f6685795616.header.json'
2026-11-13T14:43:07,480   adding 'isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.bam'
2026-11-13T14:43:07,481   adding 'isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.bam.bai'
2026-11-13T14:43:07,482   adding 'isovar/data/sid-reads/sources/63fc83ca6a5431eae770f213.header.json'
2026-11-13T14:43:07,486   adding 'isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.bam'
2026-11-13T14:43:07,491   adding 'isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.bam.bai'
2026-11-13T14:43:07,507   adding 'isovar/data/sid-reads/sources/6f23b9ee5c3945e86572eb66.header.json'
2026-11-13T14:43:07,513   adding 'isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.bam'
2026-11-13T14:43:07,515   adding 'isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.bam.bai'
2026-11-13T14:43:07,517   adding 'isovar/data/sid-reads/sources/7fcb28927c9f6862c096887e.header.json'
2026-11-13T14:43:07,518   adding 'isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.bam'
2026-11-13T14:43:07,521   adding 'isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.bam.bai'
2026-11-13T14:43:07,523   adding 'isovar/data/sid-reads/sources/8582d4b27f002464c48c781f.header.json'
2026-11-13T14:43:07,528   adding 'isovar/data/sid-reads/sources/89110c2638e7281580818e44.bam'
2026-11-13T14:43:07,531   adding 'isovar/data/sid-reads/sources/89110c2638e7281580818e44.bam.bai'
2026-11-13T14:43:07,543   adding 'isovar/data/sid-reads/sources/89110c2638e7281580818e44.header.json'
2026-11-13T14:43:07,571   adding 'isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.bam'
2026-11-13T14:43:07,582   adding 'isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.bam.bai'
2026-11-13T14:43:07,587   adding 'isovar/data/sid-reads/sources/8e41b034f2068ea46991a875.header.json'
2026-11-13T14:43:07,639   adding 'isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.bam'
2026-11-13T14:43:07,649   adding 'isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.bam.bai'
2026-11-13T14:43:07,667   adding 'isovar/data/sid-reads/sources/99255dc3e471d13bbcca8a15.header.json'
2026-11-13T14:43:07,673   adding 'isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.bam'
2026-11-13T14:43:07,675   adding 'isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.bam.bai'
2026-11-13T14:43:07,677   adding 'isovar/data/sid-reads/sources/9ab8f9a2760da0479fc17d1c.header.json'
2026-11-13T14:43:07,682   adding 'isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.bam'
2026-11-13T14:43:07,684   adding 'isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.bam.bai'
2026-11-13T14:43:07,686   adding 'isovar/data/sid-reads/sources/9cd9390098ea2e1324da19f7.header.json'
2026-11-13T14:43:07,690   adding 'isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.bam'
2026-11-13T14:43:07,692   adding 'isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.bam.bai'
2026-11-13T14:43:07,693   adding 'isovar/data/sid-reads/sources/ac0517c815ed0dfc64a454fe.header.json'
2026-11-13T14:43:07,695   adding 'isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.bam'
2026-11-13T14:43:07,698   adding 'isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.bam.bai'
2026-11-13T14:43:07,700   adding 'isovar/data/sid-reads/sources/aced29b0ffa69e9191f0966f.header.json'
2026-11-13T14:43:07,706   adding 'isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.bam'
2026-11-13T14:43:07,708   adding 'isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.bam.bai'
2026-11-13T14:43:07,721   adding 'isovar/data/sid-reads/sources/b036b10b91615f26c3d14c5f.header.json'
2026-11-13T14:43:07,729   adding 'isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.bam'
2026-11-13T14:43:07,734   adding 'isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.bam.bai'
2026-11-13T14:43:07,747   adding 'isovar/data/sid-reads/sources/b4d297a1c2aab34c9740b80f.header.json'
2026-11-13T14:43:07,756   adding 'isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.bam'
2026-11-13T14:43:07,759   adding 'isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.bam.bai'
2026-11-13T14:43:07,760   adding 'isovar/data/sid-reads/sources/b6e01dfa661dde2e6ef86329.header.json'
2026-11-13T14:43:07,790   adding 'isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.bam'
2026-11-13T14:43:07,820   adding 'isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.bam.bai'
2026-11-13T14:43:07,839   adding 'isovar/data/sid-reads/sources/c14786c8ce9298b65f3faa2d.header.json'
2026-11-13T14:43:07,843   adding 'isovar/data/sid-reads/sources/c300dbf41837763346768069.bam'
2026-11-13T14:43:07,845   adding 'isovar/data/sid-reads/sources/c300dbf41837763346768069.bam.bai'
2026-11-13T14:43:07,861   adding 'isovar/data/sid-reads/sources/c300dbf41837763346768069.header.json'
2026-11-13T14:43:07,869   adding 'isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.bam'
2026-11-13T14:43:07,873   adding 'isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.bam.bai'
2026-11-13T14:43:07,876   adding 'isovar/data/sid-reads/sources/c947cf60a75f3ec7dc948640.header.json'
2026-11-13T14:43:07,884   adding 'isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.bam'
2026-11-13T14:43:07,888   adding 'isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.bam.bai'
2026-11-13T14:43:07,903   adding 'isovar/data/sid-reads/sources/d170d3272edfa96c4dac6aca.header.json'
2026-11-13T14:43:07,998   adding 'isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.bam'
2026-11-13T14:43:08,015   adding 'isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.bam.bai'
2026-11-13T14:43:08,035   adding 'isovar/data/sid-reads/sources/e02f7ac11139cd0d01bbf3c1.header.json'
2026-11-13T14:43:08,053   adding 'isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.bam'
2026-11-13T14:43:08,057   adding 'isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.bam.bai'
2026-11-13T14:43:08,059   adding 'isovar/data/sid-reads/sources/e0f68e5116c09d6f3ca58e9c.header.json'
2026-11-13T14:43:08,168   adding 'isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.bam'
2026-11-13T14:43:08,187   adding 'isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.bam.bai'
2026-11-13T14:43:08,209   adding 'isovar/data/sid-reads/sources/e1690955f975a67d51672fc1.header.json'
2026-11-13T14:43:08,216   adding 'isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.bam'
2026-11-13T14:43:08,218   adding 'isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.bam.bai'
2026-11-13T14:43:08,221   adding 'isovar/data/sid-reads/sources/e209fb65a40eea6563ab96a2.header.json'
2026-11-13T14:43:08,226   adding 'isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.bam'
2026-11-13T14:43:08,229   adding 'isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.bam.bai'
2026-11-13T14:43:08,242   adding 'isovar/data/sid-reads/sources/e61e829a65e9d422f16191af.header.json'
2026-11-13T14:43:08,253   adding 'isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.bam'
2026-11-13T14:43:08,260   adding 'isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.bam.bai'
2026-11-13T14:43:08,273   adding 'isovar/data/sid-reads/sources/e63ce8627bef7d756b80d217.header.json'
2026-11-13T14:43:08,277   adding 'isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.bam'
2026-11-13T14:43:08,279   adding 'isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.bam.bai'
2026-11-13T14:43:08,281   adding 'isovar/data/sid-reads/sources/e71597b90129edd75af0d2a3.header.json'
2026-11-13T14:43:08,286   adding 'isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.bam'
2026-11-13T14:43:08,289   adding 'isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.bam.bai'
2026-11-13T14:43:08,302   adding 'isovar/data/sid-reads/sources/efdb0699ad69c187d2723c0c.header.json'
2026-11-13T14:43:08,432   adding 'isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.bam'
2026-11-13T14:43:08,452   adding 'isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.bam.bai'
2026-11-13T14:43:08,475   adding 'isovar/data/sid-reads/sources/f42ef62b8a857292a5300eb0.header.json'
2026-11-13T14:43:08,484   adding 'isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.bam'
2026-11-13T14:43:08,489   adding 'isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.bam.bai'
2026-11-13T14:43:08,493   adding 'isovar/data/sid-reads/sources/fcde14808fe5073ce8a2d918.header.json'
2026-11-13T14:43:08,499   adding 'isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.bam'
2026-11-13T14:43:08,502   adding 'isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.bam.bai'
2026-11-13T14:43:08,505   adding 'isovar/data/sid-reads/sources/ffc2634225ae966b32ebd383.header.json'
2026-11-13T14:43:08,509   adding 'isovar-1.83.0.dist-info/licenses/LICENSE'
2026-11-13T14:43:08,511   adding 'isovar-1.83.0.dist-info/METADATA'
2026-11-13T14:43:08,512   adding 'isovar-1.83.0.dist-info/WHEEL'
2026-11-13T14:43:08,513   adding 'isovar-1.83.0.dist-info/entry_points.txt'
2026-11-13T14:43:08,514   adding 'isovar-1.83.0.dist-info/top_level.txt'
2026-11-13T14:43:08,519   adding 'isovar-1.83.0.dist-info/RECORD'
2026-11-13T14:43:08,665   removing build/bdist.linux-armv7l/wheel
2026-11-13T14:43:08,838   Building wheel for isovar (pyproject.toml): finished with status 'done'
2026-11-13T14:43:09,134   Created wheel for isovar: filename=isovar-1.83.0-py3-none-any.whl size=11822874 sha256=ab002f8b70ef9587db6d5f3d1c59e6ec111036f46d3fa1ec6ebf8ddcf95e66b9
2026-11-13T14:43:09,135   Stored in directory: /tmp/pip-ephem-wheel-cache-syhj35b3/wheels/ea/69/b7/cb11ea8c296cf4f4c36d97574a1aaec73b9863277c0164b8cf
2026-11-13T14:43:09,162 Successfully built isovar
2026-11-13T14:43:09,443 Removed build tracker: '/tmp/pip-build-tracker-4c1kycdl'