piwheels

bam-dedup

Fast, JVM-free BAM deduplication: PCR/optical (Picard-like) and molecular/UMI consensus (fgbio-like).

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install bam-dedup

Dependencies

• pysam

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
0.3.0	2026-07-07
bam_dedup-0.3.0-cp311-cp311-linux_armv6l.whl (569 KB) bam_dedup-0.3.0-cp311-cp311-linux_armv7l.whl (569 KB) bam_dedup-0.3.0-cp313-cp313-linux_armv6l.whl (597 KB) bam_dedup-0.3.0-cp313-cp313-linux_armv7l.whl (597 KB)
0.2.0	2026-07-07
bam_dedup-0.2.0-cp311-cp311-linux_armv6l.whl (568 KB) bam_dedup-0.2.0-cp311-cp311-linux_armv7l.whl (568 KB) bam_dedup-0.2.0-cp313-cp313-linux_armv6l.whl (597 KB) bam_dedup-0.2.0-cp313-cp313-linux_armv7l.whl (597 KB)

Issues with this package?

• Search issues for this package
• Package or version missing? Open a new issue
• Something else? Open a new issue