piwheels

bio-embeddings

A pipeline for protein embedding generation and visualization

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install bio-embeddings

Dependencies

• python-slugify
• tqdm
• matplotlib
• scipy
• humanize
• umap-learn
• ruamel-yaml
• importlib-metadata
• lock
• plotly
• torch
• numpy
• atomicwrites
• biopython
• scikit-learn
• gensim
• h5py
• pandas
• appdirs

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
0.2.2	2021-09-06
bio_embeddings-0.2.2-py3-none-any.whl (103 KB)
0.2.1	2021-07-22
bio_embeddings-0.2.1-py3-none-any.whl (95 KB)
0.2.0	2021-05-14
bio_embeddings-0.2.0-py3-none-any.whl (86 KB)
0.1.7	2021-03-17
bio_embeddings-0.1.7-py3-none-any.whl (77 KB)
0.1.6	2021-02-18
bio_embeddings-0.1.6-py3-none-any.whl (72 KB)
0.1.5	2021-01-22
bio_embeddings-0.1.5-py3-none-any.whl (71 KB)
0.1.5b1 pre-release	2021-01-14
bio_embeddings-0.1.5b1-py3-none-any.whl (71 KB)
0.1.4	2020-10-01
bio_embeddings-0.1.4-py3-none-any.whl (82 KB)
0.1.3	2020-07-09
bio_embeddings-0.1.3-py3-none-any.whl (72 KB)
0.1.2	2020-05-05
bio_embeddings-0.1.2-py3-none-any.whl (100 KB)
0.1.1	2020-05-02
bio_embeddings-0.1.1-py3-none-any.whl (82 KB)
0.1.0	2020-05-01
bio_embeddings-0.1.0-py3-none-any.whl (54 KB)

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