piwheels

cellfinder

Automated 3D cell detection in large microscopy images

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install cellfinder

Dependencies

• scikit-image
• numba
• brainglobe-napari-io
• keras
• qt-niu
• scikit-learn
• natsort
• tqdm
• tifffile
• numpy
• fancylog
• dask
• brainglobe-utils
• torch

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
1.7.0	2025-05-30
cellfinder-1.7.0-py3-none-any.whl (92 KB)
1.6.0	2025-03-10
cellfinder-1.6.0-py3-none-any.whl (92 KB)
1.5.1	2025-02-26
cellfinder-1.5.1-py3-none-any.whl (92 KB)
1.5.0 yanked	2025-02-25
cellfinder-1.5.0-py3-none-any.whl (92 KB)
1.4.1	2025-02-19
cellfinder-1.4.1-py3-none-any.whl (92 KB)
1.4.0	2025-01-21
cellfinder-1.4.0-py3-none-any.whl (92 KB)
1.4.0a0 pre-release	2024-11-01
cellfinder-1.4.0a0-py3-none-any.whl (92 KB)
1.3.3	2024-10-08
cellfinder-1.3.3-py3-none-any.whl (73 KB)
1.3.2	2024-08-07
cellfinder-1.3.2-py3-none-any.whl (73 KB)
1.3.1	2024-07-19
cellfinder-1.3.1-py3-none-any.whl (73 KB)
1.3.0	2024-06-04
cellfinder-1.3.0-py3-none-any.whl (72 KB)
1.3.0rc2 pre-release	2024-06-03
cellfinder-1.3.0rc2-py3-none-any.whl (72 KB)
1.3.0rc1 pre-release	2024-05-31
cellfinder-1.3.0rc1-py3-none-any.whl (72 KB)
1.3.0rc0 pre-release	2024-05-28
cellfinder-1.3.0rc0-py3-none-any.whl (509 KB)
1.2.0	2024-05-15
cellfinder-1.2.0-py3-none-any.whl (73 KB)
1.1.3	2024-04-12
cellfinder-1.1.3-py3-none-any.whl (91 KB)
1.1.2	2024-04-05
cellfinder-1.1.2-py3-none-any.whl (91 KB)
1.1.1	2024-02-27
cellfinder-1.1.1-py3-none-any.whl (90 KB)
1.1.0	2024-01-05
cellfinder-1.1.0-py3-none-any.whl (89 KB)
1.0.0	2024-01-03
cellfinder-1.0.0-py3-none-any.whl (89 KB)
0.8.1	2023-12-13
cellfinder-0.8.1-py3-none-any.whl (29 KB)
0.8.0	2023-11-06
cellfinder-0.8.0-py3-none-any.whl (29 KB)
0.7.1	2023-08-22
cellfinder-0.7.1-py3-none-any.whl (29 KB)
0.7.0	2023-08-02
cellfinder-0.7.0-py3-none-any.whl (33 KB)
0.4.21	2022-12-13
cellfinder-0.4.21-py3-none-any.whl (33 KB)
0.4.21rc0 pre-release	2022-12-13
cellfinder-0.4.21rc0-py3-none-any.whl (33 KB)
0.4.20	2022-01-19
cellfinder-0.4.20-py3-none-any.whl (33 KB)
0.4.20rc1 pre-release	2022-01-19
cellfinder-0.4.20rc1-py3-none-any.whl (33 KB)
0.4.20rc0 pre-release	2022-01-19
cellfinder-0.4.20rc0-py3-none-any.whl (33 KB)
0.4.19	2021-10-15
cellfinder-0.4.19-py3-none-any.whl (33 KB)
0.4.19rc0 pre-release	2021-10-15
cellfinder-0.4.19rc0-py3-none-any.whl (33 KB)
0.4.17	2021-06-10
cellfinder-0.4.17-py3-none-any.whl (32 KB)
0.4.16	2021-06-10
cellfinder-0.4.16-py3-none-any.whl (32 KB)
0.4.16rc0 pre-release	2021-06-10
cellfinder-0.4.16rc0-py3-none-any.whl (32 KB)
0.4.15	2021-05-05
cellfinder-0.4.15-py3-none-any.whl (40 KB)
0.4.13	2021-05-04
cellfinder-0.4.13-py3-none-any.whl (40 KB)
0.4.13rc0 pre-release	2021-05-02
cellfinder-0.4.13rc0-py3-none-any.whl (40 KB)
0.4.12	2021-04-19
cellfinder-0.4.12-py3-none-any.whl (32 KB)
0.4.12rc0 pre-release	2021-04-19
cellfinder-0.4.12rc0-py3-none-any.whl (32 KB)
0.4.11	2021-03-11
cellfinder-0.4.11-py3-none-any.whl (31 KB)
0.4.11rc6 pre-release	2021-03-11
cellfinder-0.4.11rc6-py3-none-any.whl (31 KB)
0.4.11rc5 pre-release	2021-03-11
cellfinder-0.4.11rc5-py3-none-any.whl (31 KB)
0.4.11rc3 pre-release	2021-03-11
cellfinder-0.4.11rc3-py3-none-any.whl (39 KB)
0.4.11rc0 pre-release	2021-05-02
cellfinder-0.4.11rc0-py3-none-any.whl (39 KB)
0.4.10	2021-03-11
cellfinder-0.4.10-py3-none-any.whl (38 KB)
0.4.9	2021-03-10
cellfinder-0.4.9-py3-none-any.whl (39 KB)
0.4.8	2021-01-11
cellfinder-0.4.8-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.8-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.8-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.8-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.8-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.8-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.8-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.8-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.7	2020-11-25
cellfinder-0.4.7-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.7-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.7-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.7-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.7-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.7-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.7-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.7-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.7rc9 pre-release	2020-11-25
cellfinder-0.4.7rc9-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.7rc9-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.7rc9-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc9-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc9-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc9-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc9-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc9-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.7rc7 pre-release	2020-11-25
cellfinder-0.4.7rc7-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.7rc7-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.7rc7-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc7-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc7-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc7-cp39-cp39-linux_armv7l.whl (2 MB)
0.4.7rc6 pre-release	2020-11-25
cellfinder-0.4.7rc6-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.7rc6-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.7rc6-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc6-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc6-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc6-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc6-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc6-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.7rc5 pre-release	2020-11-25
cellfinder-0.4.7rc5-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.7rc5-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.7rc5-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc5-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc5-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc5-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc5-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc5-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.7rc4 pre-release	2020-11-25
cellfinder-0.4.7rc4-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.7rc4-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.7rc4-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc4-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc4-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc4-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc4-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc4-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.7rc3 pre-release	2020-11-25
cellfinder-0.4.7rc3-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.7rc3-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.7rc3-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc3-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.7rc3-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.7rc3-cp39-cp39-linux_armv7l.whl (2 MB)
0.4.7rc1 pre-release	2020-11-25
0.4.7rc0 pre-release	2020-11-25
0.4.7b0 pre-release	2020-11-23
0.4.7a0 pre-release	2020-11-23
cellfinder-0.4.7a0-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.7a0-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.7a0-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.7a0-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.7a0-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.7a0-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.7a0-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.7a0-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.6	2020-11-06
cellfinder-0.4.6-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.6-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.6-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.6-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.6-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.6-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.6-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.6-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.5	2020-10-29
cellfinder-0.4.5-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.5-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.5-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.5-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.5-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.5-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.5-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.5-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.4	2020-10-27
cellfinder-0.4.4-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.4-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.4-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.4-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.4-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.4-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.4-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.4-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.3	2020-10-13
cellfinder-0.4.3-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.3-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.3-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.3-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.3-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.3-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.3-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.3-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.2	2020-10-13
cellfinder-0.4.2-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.2-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.2-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.2-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.2-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.2-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.2-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.2-cp313-cp313-linux_armv7l.whl (2 MB)
0.4.1	2020-10-13
cellfinder-0.4.1-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.1-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.1-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.1-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.1-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.1-cp39-cp39-linux_armv7l.whl (2 MB)
0.4.0	2020-10-13
cellfinder-0.4.0-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.4.0-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.4.0-cp311-cp311-linux_armv6l.whl (2 MB) cellfinder-0.4.0-cp311-cp311-linux_armv7l.whl (2 MB) cellfinder-0.4.0-cp39-cp39-linux_armv6l.whl (2 MB) cellfinder-0.4.0-cp39-cp39-linux_armv7l.whl (2 MB) cellfinder-0.4.0-cp313-cp313-linux_armv6l.whl (2 MB) cellfinder-0.4.0-cp313-cp313-linux_armv7l.whl (2 MB)
0.3.15rc0 pre-release	2020-06-18
0.3.14	2020-06-12
0.3.14rc8 pre-release	2020-06-12
0.3.14rc7 pre-release	2020-06-12
0.3.14rc6 pre-release	2020-06-12
0.3.14rc5 pre-release	2020-06-12
0.3.14rc3 pre-release	2020-06-11
0.3.14rc2 pre-release	2020-05-27
0.3.14rc1 pre-release	2020-05-27
0.3.14rc0 pre-release	2020-05-15
0.3.13	2020-05-13
0.3.13rc5 pre-release	2020-05-13
0.3.13rc4 pre-release	2020-05-13
0.3.13rc3 pre-release	2020-05-11
0.3.13rc2 pre-release	2020-05-10
0.3.13rc1 pre-release	2020-05-07
0.3.13rc0 pre-release	2020-05-07
0.3.12	2020-04-30
0.3.12rc8 pre-release	2020-04-30
0.3.12rc7 pre-release	2020-04-30
0.3.12rc6 pre-release	2020-04-30
0.3.12rc5 pre-release	2020-04-30
0.3.12rc3 pre-release	2020-04-30
0.3.12rc0 pre-release	2020-04-29
0.3.11	2020-04-24
0.3.10	2020-04-16
0.3.9	2020-03-11
cellfinder-0.3.9-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.9-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.9rc1 pre-release	2020-03-11
cellfinder-0.3.9rc1-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.9rc1-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.9rc0 pre-release	2020-02-28
cellfinder-0.3.9rc0-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.9rc0-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.8	2020-02-18
cellfinder-0.3.8-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.8-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.8rc4 pre-release	2020-02-18
cellfinder-0.3.8rc4-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.8rc4-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.8rc3 pre-release	2020-02-18
cellfinder-0.3.8rc3-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.8rc3-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.8rc2 pre-release	2020-02-18
cellfinder-0.3.8rc2-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.3.8rc2-cp37-cp37m-linux_armv7l.whl (1 MB)
0.3.8rc1 pre-release	2020-02-18
cellfinder-0.3.8rc1-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.3.8rc1-cp37-cp37m-linux_armv7l.whl (1 MB)
0.3.8rc0 pre-release	2020-02-13
cellfinder-0.3.8rc0-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.3.8rc0-cp37-cp37m-linux_armv7l.whl (1 MB)
0.3.7	2020-02-12
cellfinder-0.3.7-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.7-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.7rc1 pre-release	2020-02-11
cellfinder-0.3.7rc1-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.3.7rc1-cp37-cp37m-linux_armv7l.whl (1 MB)
0.3.7rc0 pre-release	2020-02-11
cellfinder-0.3.7rc0-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.3.7rc0-cp37-cp37m-linux_armv7l.whl (1 MB)
0.3.6	2020-02-11
cellfinder-0.3.6-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.6-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.5	2020-02-03
cellfinder-0.3.5-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.5-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.4	2020-01-23
cellfinder-0.3.4-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.3.4-cp37-cp37m-linux_armv7l.whl (1 MB)
0.3.4rc3 pre-release	2020-01-23
cellfinder-0.3.4rc3-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.4rc3-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.4rc2 pre-release	2020-01-23
cellfinder-0.3.4rc2-cp37-cp37m-linux_armv6l.whl (1 MB) cellfinder-0.3.4rc2-cp37-cp37m-linux_armv7l.whl (1 MB)
0.3.4rc1 pre-release	2020-01-23
cellfinder-0.3.4rc1-cp37-cp37m-linux_armv7l.whl (1 MB) cellfinder-0.3.4rc1-cp37-cp37m-linux_armv6l.whl (1 MB)
0.3.4rc0 pre-release	2020-01-23
0.3.3	2020-01-17

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