piwheels

cohorts

Utilities for analyzing mutations and neoepitopes in patient cohorts

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install cohorts

Dependencies

• pandas
• lifelines
• mock
• topiary
• vcf-annotate-polyphen
• nose
• tqdm
• mhctools
• dill
• serializable
• scipy
• scikit-learn
• scikit-bio
• pylint
• mhcnames
• pysam
• patsy
• google-cloud-storage
• varcode
• isovar
• pyensembl
• seaborn

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
0.7.3	2017-12-30
cohorts-0.7.3-py3-none-any.whl (58 KB)
0.7.2	2017-12-29
cohorts-0.7.2-py3-none-any.whl (58 KB)
0.7.1	2017-09-01
cohorts-0.7.1-py3-none-any.whl (58 KB)
0.7.0	2017-08-30
cohorts-0.7.0-py3-none-any.whl (58 KB)
0.6.4	2017-06-05
cohorts-0.6.4-py3-none-any.whl (52 KB)
0.6.3	2017-05-28
cohorts-0.6.3-py3-none-any.whl (51 KB)
0.6.2	2017-05-19
cohorts-0.6.2-py3-none-any.whl (51 KB)
0.5.5	2017-05-17
cohorts-0.5.5-py3-none-any.whl (51 KB)
0.5.4	2017-04-29
cohorts-0.5.4-py3-none-any.whl (50 KB)
0.5.3	2017-04-27
cohorts-0.5.3-py3-none-any.whl (50 KB)
0.5.2	2017-01-18
cohorts-0.5.2-py3-none-any.whl (47 KB)
0.5.1	2017-01-17
cohorts-0.5.1-py3-none-any.whl (47 KB)
0.4.2	2016-11-30
cohorts-0.4.2-py3-none-any.whl (42 KB)
0.4.1	2016-11-22
cohorts-0.4.1-py3-none-any.whl (41 KB)
0.4.0	2016-09-28
cohorts-0.4.0-py3-none-any.whl (40 KB)
0.3.0	2016-09-27
cohorts-0.3.0-py3-none-any.whl (39 KB)
0.2.0	2016-09-22
0.1.2	2016-08-17
0.1.1	2016-06-14
cohorts-0.1.1-py3-none-any.whl (20 KB)
0.1.0	2016-05-03
cohorts-0.1.0-py3-none-any.whl (15 KB)
0.0.5	2016-04-19
cohorts-0.0.5-py3-none-any.whl (10 KB)
0.0.4	2016-04-19
cohorts-0.0.4-py3-none-any.whl (10 KB)

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