piwheels

CpGPT

CpGPT: A Foundation Model for DNA Methylation

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install cpgpt

Dependencies

• pyfaidx
• torch
• torchmetrics
• fastapi
• loguru
• torchao
• hydra-core
• transformers
• schedulefree
• lightning
• torchvision
• rich
• biopython
• pyarrow
• torchtune
• boto3
• rootutils
• ipywidgets
• lifelines
• hydra-colorlog
• sqlitedict

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
0.0.7	2025-09-05
cpgpt-0.0.7-py3-none-any.whl (89 KB)
0.0.6	2025-06-15
cpgpt-0.0.6-py3-none-any.whl (89 KB)
0.0.5	2025-05-16
cpgpt-0.0.5-py3-none-any.whl (89 KB)
0.0.4	2025-03-29
cpgpt-0.0.4-py3-none-any.whl (88 KB)
0.0.3	2025-03-27
cpgpt-0.0.3-py3-none-any.whl (88 KB)
0.0.2	2025-03-19
cpgpt-0.0.2-py3-none-any.whl (87 KB)
0.0.1	2025-03-18
cpgpt-0.0.1-py3-none-any.whl (89 KB)

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