cyto-dl
Collection of representation learning models, techniques, callbacks, utils, used to create latent variable models of cell shape, morphology and intracellular organization.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install cyto-dl
Dependencies
- ome-zarr
- bioio-base
- torch
- tifffile
- fire
- matplotlib
- pyrootutils
- monai
- bioio-czi
- scikit-learn
- timm
- einops
- pyyaml
- hydra-core
- tqdm
- astropy
- lightning
- omegaconf
- rich
- online-stats
- hydra-optuna-sweeper
- mlflow
- pyarrow
- edt
- pandas
- boto3
- bioio
- universal-pathlib
- bioio-ome-tiff
- hydra-colorlog
- positional-encodings
- anndata
- opencv-python
- numpy
- bioio-tifffile
Releases
| Version | Released | Bullseye Python 3.9 |
Bookworm Python 3.11 |
Trixie Python 3.13 |
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| 0.6.2 | 2025-11-24 | ||||
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| 0.6.1 | 2025-05-05 | ||||
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| 0.6.0 | 2025-04-25 | ||||
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| 0.5.1 | 2025-04-09 | ||||
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| 0.5.0 | 2025-04-01 | ||||
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| 0.4.5 | 2025-02-21 | ||||
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| 0.4.4 | 2024-11-25 | ||||
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| 0.4.3 | 2024-11-20 | ||||
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| 0.4.2 | 2024-11-12 | ||||
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| 0.4.1 | 2024-10-02 | ||||
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| 0.4.0 | 2024-08-14 | ||||
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| 0.3.0 | 2024-08-09 | ||||
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| 0.1.8 | 2024-07-02 | ||||
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| 0.1.7 | 2024-05-08 | ||||
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| 0.1.6 | 2024-05-03 | ||||
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| 0.1.5 | 2024-04-01 | ||||
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| 0.1.4 | 2024-03-09 | ||||
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| 0.1.3 | 2024-02-29 | ||||
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| 0.1.2 | 2024-02-29 | ||||
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| 0.1.1 | 2024-02-15 | ||||
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| 0.1.0 | 2024-02-09 | ||||
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| 0.0.0 | 2023-11-03 | ||||
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