piwheels

gvc4bam

GVC4BAM is a data processing pipeline developed by Genome Wisdom Inc. GVC4FASTQ detects germline and somatic mutations (SNV, InDel, SV) from BAM files.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install gvc4bam

Dependencies

• pysam
• docker
• toil
• toil-runner

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
1.0.10	2019-12-31
gvc4bam-1.0.10-py3-none-any.whl (28 KB)
1.0.9	2019-12-31
gvc4bam-1.0.9-py3-none-any.whl (28 KB)
1.0.8	2019-08-19
gvc4bam-1.0.8-py3-none-any.whl (28 KB)
1.0.7	2019-08-15
gvc4bam-1.0.7-py3-none-any.whl (27 KB)
1.0.6	2019-08-12
gvc4bam-1.0.6-py3-none-any.whl (26 KB)
1.0.4	2019-08-06
gvc4bam-1.0.4-py3-none-any.whl (31 KB)
1.0.3	2019-08-06
gvc4bam-1.0.3-py3-none-any.whl (31 KB)
1.0.2	2019-08-06
gvc4bam-1.0.2-py3-none-any.whl (31 KB)
1.0.1	2019-08-06
gvc4bam-1.0.1-py3-none-any.whl (31 KB)
1.0	2019-08-05
gvc4bam-1.0-py3-none-any.whl (30 KB)

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