piwheels

megalodon

Nanopore base calling augmentation.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install megalodon

Dependencies

• ont-fast5-api
• cython
• tqdm
• seaborn
• ont-pyguppy-client-lib
• scikit-learn
• pysam
• numpy
• h5py
• ont-remora
• mappy
• scipy

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
2.5.0	2022-03-25
megalodon-2.5.0-cp37-cp37m-linux_armv6l.whl (6 MB) megalodon-2.5.0-cp37-cp37m-linux_armv7l.whl (6 MB) megalodon-2.5.0-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.5.0-cp39-cp39-linux_armv7l.whl (7 MB)
2.4.2	2022-01-26
megalodon-2.4.2-cp37-cp37m-linux_armv6l.whl (6 MB) megalodon-2.4.2-cp37-cp37m-linux_armv7l.whl (6 MB) megalodon-2.4.2-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.4.2-cp39-cp39-linux_armv7l.whl (7 MB)
2.4.1	2021-12-14
megalodon-2.4.1-cp37-cp37m-linux_armv6l.whl (6 MB) megalodon-2.4.1-cp37-cp37m-linux_armv7l.whl (6 MB) megalodon-2.4.1-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.4.1-cp39-cp39-linux_armv7l.whl (7 MB)
2.4.0	2021-12-01
megalodon-2.4.0-cp37-cp37m-linux_armv6l.whl (7 MB) megalodon-2.4.0-cp37-cp37m-linux_armv7l.whl (7 MB) megalodon-2.4.0-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.4.0-cp39-cp39-linux_armv7l.whl (7 MB)
2.3.5	2021-10-26
megalodon-2.3.5-cp37-cp37m-linux_armv6l.whl (7 MB) megalodon-2.3.5-cp37-cp37m-linux_armv7l.whl (7 MB) megalodon-2.3.5-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.3.5-cp39-cp39-linux_armv7l.whl (7 MB)
2.3.4	2021-07-19
megalodon-2.3.4-cp37-cp37m-linux_armv6l.whl (7 MB) megalodon-2.3.4-cp37-cp37m-linux_armv7l.whl (7 MB) megalodon-2.3.4-cp311-cp311-linux_armv6l.whl (7 MB) megalodon-2.3.4-cp311-cp311-linux_armv7l.whl (7 MB) megalodon-2.3.4-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.3.4-cp39-cp39-linux_armv7l.whl (7 MB) megalodon-2.3.4-cp313-cp313-linux_armv6l.whl (7 MB) megalodon-2.3.4-cp313-cp313-linux_armv7l.whl (7 MB)
2.3.3	2021-05-27
megalodon-2.3.3-cp311-cp311-linux_armv6l.whl (7 MB) megalodon-2.3.3-cp311-cp311-linux_armv7l.whl (7 MB) megalodon-2.3.3-cp37-cp37m-linux_armv6l.whl (7 MB) megalodon-2.3.3-cp37-cp37m-linux_armv7l.whl (7 MB) megalodon-2.3.3-cp35-cp35m-linux_armv6l.whl (6 MB) megalodon-2.3.3-cp35-cp35m-linux_armv7l.whl (6 MB) megalodon-2.3.3-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.3.3-cp39-cp39-linux_armv7l.whl (7 MB) megalodon-2.3.3-cp313-cp313-linux_armv6l.whl (7 MB) megalodon-2.3.3-cp313-cp313-linux_armv7l.whl (7 MB)
2.3.2	2021-05-26
megalodon-2.3.2-cp311-cp311-linux_armv6l.whl (7 MB) megalodon-2.3.2-cp311-cp311-linux_armv7l.whl (7 MB) megalodon-2.3.2-cp35-cp35m-linux_armv6l.whl (6 MB) megalodon-2.3.2-cp35-cp35m-linux_armv7l.whl (6 MB) megalodon-2.3.2-cp37-cp37m-linux_armv6l.whl (7 MB) megalodon-2.3.2-cp37-cp37m-linux_armv7l.whl (7 MB) megalodon-2.3.2-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.3.2-cp39-cp39-linux_armv7l.whl (7 MB) megalodon-2.3.2-cp313-cp313-linux_armv6l.whl (7 MB) megalodon-2.3.2-cp313-cp313-linux_armv7l.whl (7 MB)
2.3.1	2021-04-05
megalodon-2.3.1-cp35-cp35m-linux_armv6l.whl (6 MB) megalodon-2.3.1-cp35-cp35m-linux_armv7l.whl (6 MB) megalodon-2.3.1-cp37-cp37m-linux_armv6l.whl (7 MB) megalodon-2.3.1-cp37-cp37m-linux_armv7l.whl (7 MB) megalodon-2.3.1-cp311-cp311-linux_armv6l.whl (7 MB) megalodon-2.3.1-cp311-cp311-linux_armv7l.whl (7 MB) megalodon-2.3.1-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-2.3.1-cp39-cp39-linux_armv7l.whl (7 MB) megalodon-2.3.1-cp313-cp313-linux_armv6l.whl (7 MB) megalodon-2.3.1-cp313-cp313-linux_armv7l.whl (7 MB)
2.3.0	2021-04-01
megalodon-2.3.0-cp35-cp35m-linux_armv6l.whl (506 KB) megalodon-2.3.0-cp35-cp35m-linux_armv7l.whl (506 KB) megalodon-2.3.0-cp37-cp37m-linux_armv6l.whl (575 KB) megalodon-2.3.0-cp37-cp37m-linux_armv7l.whl (575 KB) megalodon-2.3.0-cp311-cp311-linux_armv6l.whl (693 KB) megalodon-2.3.0-cp311-cp311-linux_armv7l.whl (693 KB) megalodon-2.3.0-cp39-cp39-linux_armv6l.whl (614 KB) megalodon-2.3.0-cp39-cp39-linux_armv7l.whl (614 KB) megalodon-2.3.0-cp313-cp313-linux_armv6l.whl (722 KB) megalodon-2.3.0-cp313-cp313-linux_armv7l.whl (722 KB)
2.2.10	2021-02-02
megalodon-2.2.10-cp35-cp35m-linux_armv6l.whl (8 MB) megalodon-2.2.10-cp35-cp35m-linux_armv7l.whl (8 MB) megalodon-2.2.10-cp37-cp37m-linux_armv6l.whl (8 MB) megalodon-2.2.10-cp37-cp37m-linux_armv7l.whl (8 MB) megalodon-2.2.10-cp39-cp39-linux_armv6l.whl (8 MB) megalodon-2.2.10-cp39-cp39-linux_armv7l.whl (8 MB)
2.2.9	2020-12-02
megalodon-2.2.9-cp35-cp35m-linux_armv6l.whl (8 MB) megalodon-2.2.9-cp35-cp35m-linux_armv7l.whl (8 MB) megalodon-2.2.9-cp37-cp37m-linux_armv6l.whl (8 MB) megalodon-2.2.9-cp37-cp37m-linux_armv7l.whl (8 MB) megalodon-2.2.9-cp39-cp39-linux_armv6l.whl (8 MB) megalodon-2.2.9-cp39-cp39-linux_armv7l.whl (8 MB)
2.2.8	2020-11-26
megalodon-2.2.8-cp37-cp37m-linux_armv6l.whl (8 MB) megalodon-2.2.8-cp37-cp37m-linux_armv7l.whl (8 MB) megalodon-2.2.8-cp35-cp35m-linux_armv6l.whl (8 MB) megalodon-2.2.8-cp35-cp35m-linux_armv7l.whl (8 MB) megalodon-2.2.8-cp39-cp39-linux_armv6l.whl (8 MB) megalodon-2.2.8-cp39-cp39-linux_armv7l.whl (8 MB)
2.2.7	2020-11-25
megalodon-2.2.7-cp35-cp35m-linux_armv6l.whl (8 MB) megalodon-2.2.7-cp35-cp35m-linux_armv7l.whl (8 MB) megalodon-2.2.7-cp37-cp37m-linux_armv6l.whl (8 MB) megalodon-2.2.7-cp37-cp37m-linux_armv7l.whl (8 MB) megalodon-2.2.7-cp39-cp39-linux_armv6l.whl (8 MB) megalodon-2.2.7-cp39-cp39-linux_armv7l.whl (8 MB)
2.2.6	2020-11-17
megalodon-2.2.6-cp35-cp35m-linux_armv6l.whl (8 MB) megalodon-2.2.6-cp35-cp35m-linux_armv7l.whl (8 MB) megalodon-2.2.6-cp37-cp37m-linux_armv6l.whl (8 MB) megalodon-2.2.6-cp37-cp37m-linux_armv7l.whl (8 MB) megalodon-2.2.6-cp39-cp39-linux_armv6l.whl (8 MB) megalodon-2.2.6-cp39-cp39-linux_armv7l.whl (8 MB)
2.2.5	2020-11-09
megalodon-2.2.5-cp37-cp37m-linux_armv6l.whl (8 MB) megalodon-2.2.5-cp37-cp37m-linux_armv7l.whl (8 MB) megalodon-2.2.5-cp35-cp35m-linux_armv6l.whl (8 MB) megalodon-2.2.5-cp35-cp35m-linux_armv7l.whl (8 MB) megalodon-2.2.5-cp39-cp39-linux_armv6l.whl (8 MB) megalodon-2.2.5-cp39-cp39-linux_armv7l.whl (8 MB)
2.2.4	2020-10-20
megalodon-2.2.4-cp35-cp35m-linux_armv6l.whl (8 MB) megalodon-2.2.4-cp35-cp35m-linux_armv7l.whl (8 MB) megalodon-2.2.4-cp37-cp37m-linux_armv6l.whl (8 MB) megalodon-2.2.4-cp37-cp37m-linux_armv7l.whl (8 MB) megalodon-2.2.4-cp39-cp39-linux_armv6l.whl (8 MB) megalodon-2.2.4-cp39-cp39-linux_armv7l.whl (8 MB)
2.2.3	2020-09-30
megalodon-2.2.3-cp37-cp37m-linux_armv6l.whl (6 MB) megalodon-2.2.3-cp37-cp37m-linux_armv7l.whl (6 MB) megalodon-2.2.3-cp35-cp35m-linux_armv6l.whl (6 MB) megalodon-2.2.3-cp35-cp35m-linux_armv7l.whl (6 MB) megalodon-2.2.3-cp39-cp39-linux_armv6l.whl (6 MB) megalodon-2.2.3-cp39-cp39-linux_armv7l.whl (6 MB)
2.2.2	2020-09-18
megalodon-2.2.2-cp37-cp37m-linux_armv6l.whl (6 MB) megalodon-2.2.2-cp37-cp37m-linux_armv7l.whl (6 MB) megalodon-2.2.2-cp35-cp35m-linux_armv6l.whl (6 MB) megalodon-2.2.2-cp35-cp35m-linux_armv7l.whl (6 MB) megalodon-2.2.2-cp39-cp39-linux_armv6l.whl (6 MB) megalodon-2.2.2-cp39-cp39-linux_armv7l.whl (6 MB)
2.2.1	2020-09-08
megalodon-2.2.1-cp35-cp35m-linux_armv6l.whl (6 MB) megalodon-2.2.1-cp35-cp35m-linux_armv7l.whl (6 MB) megalodon-2.2.1-cp37-cp37m-linux_armv6l.whl (6 MB) megalodon-2.2.1-cp37-cp37m-linux_armv7l.whl (6 MB) megalodon-2.2.1-cp39-cp39-linux_armv6l.whl (6 MB) megalodon-2.2.1-cp39-cp39-linux_armv7l.whl (6 MB)
2.2.0	2020-08-20
megalodon-2.2.0-cp35-cp35m-linux_armv6l.whl (6 MB) megalodon-2.2.0-cp35-cp35m-linux_armv7l.whl (6 MB) megalodon-2.2.0-cp37-cp37m-linux_armv6l.whl (6 MB) megalodon-2.2.0-cp37-cp37m-linux_armv7l.whl (6 MB) megalodon-2.2.0-cp39-cp39-linux_armv6l.whl (6 MB) megalodon-2.2.0-cp39-cp39-linux_armv7l.whl (6 MB)
2.1.0	2020-06-17
megalodon-2.1.0-cp35-cp35m-linux_armv6l.whl (6 MB) megalodon-2.1.0-cp35-cp35m-linux_armv7l.whl (6 MB) megalodon-2.1.0-cp37-cp37m-linux_armv6l.whl (6 MB) megalodon-2.1.0-cp37-cp37m-linux_armv7l.whl (6 MB) megalodon-2.1.0-cp39-cp39-linux_armv6l.whl (6 MB) megalodon-2.1.0-cp39-cp39-linux_armv7l.whl (6 MB)
2.0.0	2020-03-19
megalodon-2.0.0-cp35-cp35m-linux_armv6l.whl (355 KB) megalodon-2.0.0-cp35-cp35m-linux_armv7l.whl (355 KB) megalodon-2.0.0-cp37-cp37m-linux_armv6l.whl (411 KB) megalodon-2.0.0-cp37-cp37m-linux_armv7l.whl (411 KB) megalodon-2.0.0-cp39-cp39-linux_armv6l.whl (416 KB) megalodon-2.0.0-cp39-cp39-linux_armv7l.whl (416 KB)
1.0.0	2020-02-25
megalodon-1.0.0-cp35-cp35m-linux_armv6l.whl (7 MB) megalodon-1.0.0-cp35-cp35m-linux_armv7l.whl (7 MB) megalodon-1.0.0-cp37-cp37m-linux_armv6l.whl (7 MB) megalodon-1.0.0-cp37-cp37m-linux_armv7l.whl (7 MB) megalodon-1.0.0-cp39-cp39-linux_armv6l.whl (7 MB) megalodon-1.0.0-cp39-cp39-linux_armv7l.whl (7 MB)

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