netmedex

A tool to extract BioConcept entities (e.g., genes, diseases, chemicals, and species) from Pubtator3 and generate a co-mention network for interactive use.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install netmedex

Dependencies

Releases

Version Released Bullseye
Python 3.9
Bookworm
Python 3.11
Files
0.3.0 2025-07-09    
0.2.0 2025-06-15    
0.1.1 2025-01-08    
0.1.0 2024-12-26    
0.1.0b0 pre-release 2024-12-19    

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Page last updated 2025-09-01 20:50:50 UTC