piwheels

pacmill

The `pacmill` python package is a bioinformatics pipeline that is developed to process microbial 16S amplicon sequencing data.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install pacmill

Dependencies

• rpy2
• tabulate
• fasta
• matplotlib
• ftputil
• openpyxl
• sh
• shell-command
• autopaths
• p-tqdm
• tag
• brewer2mpl
• wget
• plumbing
• seqsearch
• regex
• mock
• pystache
• pymarktex
• crest4
• biopython
• pandas

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
0.6.1	2021-07-14
pacmill-0.6.1-py3-none-any.whl (70 KB)
0.3.4	2020-08-26
pacmill-0.3.4-py3-none-any.whl (9 KB)
0.3.2	2020-08-16
pacmill-0.3.2-py3-none-any.whl (6 KB)
0.2.9	2020-08-16
pacmill-0.2.9-py3-none-any.whl (6 KB)
0.2.8	2020-08-16
pacmill-0.2.8-py3-none-any.whl (6 KB)
0.2.7	2020-08-16
pacmill-0.2.7-py3-none-any.whl (6 KB)
0.2.1	2020-08-02
pacmill-0.2.1-py3-none-any.whl (5 KB)

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