piwheels

phydms

Phylogenetic analyses informed by deep mutational scanning data.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install phydms

Dependencies

• natsort
• sympy
• statsmodels
• pyvolve
• cython
• six
• biopython
• matplotlib
• pypdf2
• numpy
• scipy
• pandas
• weblogo

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
2.4.2	2026-04-05
phydms-2.4.2-cp311-cp311-linux_armv7l.whl (243 KB) phydms-2.4.2-cp311-cp311-linux_armv6l.whl (243 KB) phydms-2.4.2-cp313-cp313-linux_armv6l.whl (250 KB) phydms-2.4.2-cp313-cp313-linux_armv7l.whl (250 KB)
2.4.1	2021-04-14
phydms-2.4.1-cp37-cp37m-linux_armv6l.whl (207 KB) phydms-2.4.1-cp37-cp37m-linux_armv7l.whl (207 KB) phydms-2.4.1-cp39-cp39-linux_armv6l.whl (202 KB) phydms-2.4.1-cp39-cp39-linux_armv7l.whl (202 KB) phydms-2.4.1-cp313-cp313-linux_armv6l.whl (249 KB) phydms-2.4.1-cp313-cp313-linux_armv7l.whl (249 KB)
2.4.0	2020-11-23
phydms-2.4.0-cp37-cp37m-linux_armv6l.whl (208 KB) phydms-2.4.0-cp37-cp37m-linux_armv7l.whl (208 KB) phydms-2.4.0-cp35-cp35m-linux_armv6l.whl (181 KB) phydms-2.4.0-cp35-cp35m-linux_armv7l.whl (181 KB) phydms-2.4.0-cp39-cp39-linux_armv6l.whl (202 KB) phydms-2.4.0-cp39-cp39-linux_armv7l.whl (202 KB) phydms-2.4.0-cp313-cp313-linux_armv6l.whl (249 KB) phydms-2.4.0-cp313-cp313-linux_armv7l.whl (249 KB)
2.3.8	2020-01-14
phydms-2.3.8-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.8-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.8-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.8-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.8-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.8-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.8-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.3.8-cp313-cp313-linux_armv7l.whl (247 KB)
2.3.7	2020-01-12
phydms-2.3.7-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.7-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.7-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.7-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.7-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.7-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.7-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.3.7-cp313-cp313-linux_armv7l.whl (247 KB)
2.3.6	2019-11-22
phydms-2.3.6-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.6-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.6-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.6-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.6-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.6-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.6-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.3.6-cp313-cp313-linux_armv7l.whl (247 KB)
2.3.5	2019-11-22
phydms-2.3.5-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.5-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.5-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.5-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.5-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.5-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.5-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.3.5-cp313-cp313-linux_armv7l.whl (247 KB)
2.3.4	2019-11-17
phydms-2.3.4-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.4-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.4-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.4-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.4-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.4-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.4-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.3.4-cp313-cp313-linux_armv7l.whl (247 KB)
2.3.3	2019-07-23
phydms-2.3.3-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.3-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.3-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.3-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.3-cp34-cp34m-linux_armv7l.whl (186 KB) phydms-2.3.3-cp34-cp34m-linux_armv6l.whl (186 KB) phydms-2.3.3-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.3-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.3-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.3.3-cp313-cp313-linux_armv7l.whl (247 KB)
2.3.2	2019-06-09
phydms-2.3.2-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.2-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.2-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.2-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.2-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.2-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.2-cp34-cp34m-linux_armv7l.whl (186 KB) phydms-2.3.2-cp34-cp34m-linux_armv6l.whl (186 KB) phydms-2.3.2-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.3.2-cp313-cp313-linux_armv7l.whl (247 KB)
2.3.1	2018-07-23
phydms-2.3.1-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.1-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.1-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.1-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.1-cp34-cp34m-linux_armv7l.whl (178 KB) phydms-2.3.1-cp34-cp34m-linux_armv6l.whl (178 KB) phydms-2.3.1-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.1-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.1-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.3.1-cp313-cp313-linux_armv7l.whl (247 KB)
2.3.0	2018-06-20
phydms-2.3.0-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.3.0-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.3.0-cp34-cp34m-linux_armv7l.whl (177 KB) phydms-2.3.0-cp34-cp34m-linux_armv6l.whl (177 KB) phydms-2.3.0-cp35-cp35m-linux_armv7l.whl (179 KB) phydms-2.3.0-cp35-cp35m-linux_armv6l.whl (179 KB) phydms-2.3.0-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.3.0-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.3.0-cp313-cp313-linux_armv7l.whl (247 KB) phydms-2.3.0-cp313-cp313-linux_armv6l.whl (247 KB)
2.2.2	2018-03-12
phydms-2.2.2-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.2.2-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.2.2-cp34-cp34m-linux_armv7l.whl (177 KB) phydms-2.2.2-cp34-cp34m-linux_armv6l.whl (177 KB) phydms-2.2.2-cp35-cp35m-linux_armv6l.whl (177 KB) phydms-2.2.2-cp35-cp35m-linux_armv7l.whl (177 KB) phydms-2.2.2-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.2.2-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.2.2-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.2.2-cp313-cp313-linux_armv7l.whl (247 KB)
2.2.1	2018-01-25
phydms-2.2.1-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.2.1-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.2.1-cp35-cp35m-linux_armv6l.whl (177 KB) phydms-2.2.1-cp35-cp35m-linux_armv7l.whl (177 KB) phydms-2.2.1-cp34-cp34m-linux_armv7l.whl (177 KB) phydms-2.2.1-cp34-cp34m-linux_armv6l.whl (177 KB) phydms-2.2.1-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.2.1-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.2.1-cp313-cp313-linux_armv6l.whl (247 KB) phydms-2.2.1-cp313-cp313-linux_armv7l.whl (247 KB)
2.2.0	2017-10-29
phydms-2.2.0-cp37-cp37m-linux_armv7l.whl (206 KB) phydms-2.2.0-cp37-cp37m-linux_armv6l.whl (206 KB) phydms-2.2.0-cp35-cp35m-linux_armv7l.whl (177 KB) phydms-2.2.0-cp35-cp35m-linux_armv6l.whl (177 KB) phydms-2.2.0-cp34-cp34m-linux_armv7l.whl (177 KB) phydms-2.2.0-cp34-cp34m-linux_armv6l.whl (177 KB) phydms-2.2.0-cp39-cp39-linux_armv6l.whl (200 KB) phydms-2.2.0-cp39-cp39-linux_armv7l.whl (200 KB) phydms-2.2.0-cp313-cp313-linux_armv7l.whl (247 KB) phydms-2.2.0-cp313-cp313-linux_armv6l.whl (247 KB)
2.1.4	2017-10-25
phydms-2.1.4-cp37-cp37m-linux_armv7l.whl (205 KB) phydms-2.1.4-cp37-cp37m-linux_armv6l.whl (205 KB) phydms-2.1.4-cp35-cp35m-linux_armv6l.whl (175 KB) phydms-2.1.4-cp35-cp35m-linux_armv7l.whl (175 KB) phydms-2.1.4-cp34-cp34m-linux_armv7l.whl (176 KB) phydms-2.1.4-cp34-cp34m-linux_armv6l.whl (176 KB) phydms-2.1.4-cp39-cp39-linux_armv6l.whl (199 KB) phydms-2.1.4-cp39-cp39-linux_armv7l.whl (199 KB) phydms-2.1.4-cp313-cp313-linux_armv6l.whl (246 KB) phydms-2.1.4-cp313-cp313-linux_armv7l.whl (246 KB)
2.1.3	2017-10-03
phydms-2.1.3-cp37-cp37m-linux_armv7l.whl (204 KB) phydms-2.1.3-cp37-cp37m-linux_armv6l.whl (204 KB) phydms-2.1.3-cp35-cp35m-linux_armv6l.whl (175 KB) phydms-2.1.3-cp35-cp35m-linux_armv7l.whl (175 KB) phydms-2.1.3-cp34-cp34m-linux_armv7l.whl (175 KB) phydms-2.1.3-cp34-cp34m-linux_armv6l.whl (175 KB) phydms-2.1.3-cp39-cp39-linux_armv6l.whl (198 KB) phydms-2.1.3-cp39-cp39-linux_armv7l.whl (198 KB) phydms-2.1.3-cp313-cp313-linux_armv6l.whl (245 KB) phydms-2.1.3-cp313-cp313-linux_armv7l.whl (245 KB)
2.1.2	2017-09-19
phydms-2.1.2-cp37-cp37m-linux_armv6l.whl (204 KB) phydms-2.1.2-cp37-cp37m-linux_armv7l.whl (204 KB) phydms-2.1.2-cp35-cp35m-linux_armv7l.whl (174 KB) phydms-2.1.2-cp35-cp35m-linux_armv6l.whl (174 KB) phydms-2.1.2-cp34-cp34m-linux_armv6l.whl (175 KB) phydms-2.1.2-cp34-cp34m-linux_armv7l.whl (175 KB) phydms-2.1.2-cp39-cp39-linux_armv6l.whl (198 KB) phydms-2.1.2-cp39-cp39-linux_armv7l.whl (198 KB) phydms-2.1.2-cp313-cp313-linux_armv6l.whl (245 KB) phydms-2.1.2-cp313-cp313-linux_armv7l.whl (245 KB)
2.1.1	2017-09-01
phydms-2.1.1-cp37-cp37m-linux_armv7l.whl (203 KB) phydms-2.1.1-cp37-cp37m-linux_armv6l.whl (203 KB) phydms-2.1.1-cp34-cp34m-linux_armv7l.whl (174 KB) phydms-2.1.1-cp35-cp35m-linux_armv7l.whl (174 KB) phydms-2.1.1-cp35-cp35m-linux_armv6l.whl (174 KB) phydms-2.1.1-cp311-cp311-linux_armv6l.whl (242 KB) phydms-2.1.1-cp311-cp311-linux_armv7l.whl (242 KB) phydms-2.1.1-cp39-cp39-linux_armv6l.whl (198 KB) phydms-2.1.1-cp39-cp39-linux_armv7l.whl (198 KB) phydms-2.1.1-cp313-cp313-linux_armv6l.whl (244 KB) phydms-2.1.1-cp313-cp313-linux_armv7l.whl (244 KB)
2.1.0	2017-08-31
phydms-2.1.0-cp37-cp37m-linux_armv6l.whl (203 KB) phydms-2.1.0-cp37-cp37m-linux_armv7l.whl (203 KB) phydms-2.1.0-cp35-cp35m-linux_armv6l.whl (170 KB) phydms-2.1.0-cp35-cp35m-linux_armv7l.whl (170 KB) phydms-2.1.0-cp34-cp34m-linux_armv7l.whl (174 KB) phydms-2.1.0-cp39-cp39-linux_armv6l.whl (198 KB) phydms-2.1.0-cp39-cp39-linux_armv7l.whl (198 KB)
2.0.5	2017-05-17
phydms-2.0.5-cp34-cp34m-linux_armv7l.whl (172 KB) phydms-2.0.5-cp34-cp34m-linux_armv6l.whl (172 KB) phydms-2.0.5-cp35-cp35m-linux_armv6l.whl (173 KB) phydms-2.0.5-cp35-cp35m-linux_armv7l.whl (173 KB)
2.0.4	2017-05-12
phydms-2.0.4-cp35-cp35m-linux_armv6l.whl (169 KB) phydms-2.0.4-cp35-cp35m-linux_armv7l.whl (169 KB) phydms-2.0.4-cp34-cp34m-linux_armv7l.whl (172 KB) phydms-2.0.4-cp34-cp34m-linux_armv6l.whl (172 KB)
2.0.3	2017-04-17
phydms-2.0.3-cp35-cp35m-linux_armv6l.whl (173 KB) phydms-2.0.3-cp35-cp35m-linux_armv7l.whl (173 KB) phydms-2.0.3-cp34-cp34m-linux_armv7l.whl (172 KB) phydms-2.0.3-cp34-cp34m-linux_armv6l.whl (172 KB)
2.0.2	2017-04-15
phydms-2.0.2-cp34-cp34m-linux_armv7l.whl (171 KB) phydms-2.0.2-cp34-cp34m-linux_armv6l.whl (171 KB) phydms-2.0.2-cp35-cp35m-linux_armv7l.whl (173 KB) phydms-2.0.2-cp35-cp35m-linux_armv6l.whl (173 KB)
2.0.1	2017-03-29
phydms-2.0.1-cp34-cp34m-linux_armv7l.whl (170 KB) phydms-2.0.1-cp34-cp34m-linux_armv6l.whl (170 KB) phydms-2.0.1-cp35-cp35m-linux_armv7l.whl (170 KB) phydms-2.0.1-cp35-cp35m-linux_armv6l.whl (170 KB)
2.0.0	2017-03-13
phydms-2.0.0-cp34-cp34m-linux_armv7l.whl (165 KB) phydms-2.0.0-cp34-cp34m-linux_armv6l.whl (165 KB) phydms-2.0.0-cp35-cp35m-linux_armv7l.whl (165 KB) phydms-2.0.0-cp35-cp35m-linux_armv6l.whl (165 KB)
1.3.0	2016-10-05
1.2.5	2016-08-13
1.2.4	2016-07-31
1.2.3	2016-07-15
1.2.2	2016-04-05
1.2.1	2016-03-31
1.2.0	2016-03-14
1.1.0	2016-02-20
1.0.2	2016-01-15
1.0.1	2016-01-05
1.0.0	2016-01-05

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