piwheels

pysamstats

A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install pysamstats

Dependencies

• pysam
• numpy

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
1.1.2	2018-12-19
pysamstats-1.1.2-cp39-cp39-linux_armv6l.whl (1 MB) pysamstats-1.1.2-cp39-cp39-linux_armv7l.whl (1 MB) pysamstats-1.1.2-cp37-cp37m-linux_armv7l.whl (1 MB) pysamstats-1.1.2-cp37-cp37m-linux_armv6l.whl (1 MB) pysamstats-1.1.2-cp34-cp34m-linux_armv6l.whl (563 KB) pysamstats-1.1.2-cp34-cp34m-linux_armv7l.whl (563 KB) pysamstats-1.1.2-cp35-cp35m-linux_armv7l.whl (557 KB) pysamstats-1.1.2-cp35-cp35m-linux_armv6l.whl (557 KB)
1.1.1	2018-12-19
pysamstats-1.1.1-cp39-cp39-linux_armv6l.whl (1 MB) pysamstats-1.1.1-cp39-cp39-linux_armv7l.whl (1 MB) pysamstats-1.1.1-cp37-cp37m-linux_armv6l.whl (1 MB) pysamstats-1.1.1-cp37-cp37m-linux_armv7l.whl (1 MB) pysamstats-1.1.1-cp34-cp34m-linux_armv7l.whl (563 KB) pysamstats-1.1.1-cp34-cp34m-linux_armv6l.whl (563 KB) pysamstats-1.1.1-cp35-cp35m-linux_armv7l.whl (557 KB) pysamstats-1.1.1-cp35-cp35m-linux_armv6l.whl (557 KB)
1.1.0	2018-12-19
1.0.1	2017-07-21
1.0.0	2017-07-20
0.24.3	2016-05-06
0.24.2	2016-01-20
0.24.1	2015-12-08
0.24.0	2015-12-01
0.24.0rc2 pre-release	2015-12-01
0.24.0rc1 pre-release	2015-12-01
0.23	2015-07-12
0.22	2015-07-10
0.21	2015-01-21
0.20	2015-01-21
0.20b4 pre-release	2015-01-21
0.20b3 pre-release	2015-01-21
0.20b2 pre-release	2015-01-21
0.20b1 pre-release	2015-01-21
pysamstats-0.20b1-py3-none-any.whl (5 KB)
0.19	2014-10-21
0.18	2014-10-21
0.17	2014-10-17
0.16	2014-08-20
0.15.1	2014-04-16
0.15	2014-04-16
0.14	2014-02-20
0.12	2014-01-15
0.11.1	2013-12-18
0.10	2013-12-05
0.9.1	2013-10-24
0.9	2013-10-23
0.8.3	2013-07-23
0.8.2	2013-07-23
0.8.1	2013-07-23
0.8	2013-07-23
0.7	2013-05-18
0.6.3	2013-05-02
0.6.2	2013-05-02
0.6.1	2013-04-17
0.6	2013-04-17
0.5	2013-04-17
0.4.9	2013-02-01
0.4.8	2013-02-01
0.4.7	2013-02-01
0.4.6	2013-02-01
0.4.5	2013-01-25
pysamstats-0.4.5-cp34-cp34m-linux_armv7l.whl (481 KB) pysamstats-0.4.5-cp34-cp34m-linux_armv6l.whl (481 KB) pysamstats-0.4.5-cp35-cp35m-linux_armv7l.whl (489 KB) pysamstats-0.4.5-cp35-cp35m-linux_armv6l.whl (489 KB)
0.4.4	2013-01-22
0.4.3	2013-01-22
0.4.2	2013-01-22
0.4.1	2013-01-22
pysamstats-0.4.1-cp37-cp37m-linux_armv7l.whl (727 KB) pysamstats-0.4.1-cp37-cp37m-linux_armv6l.whl (727 KB) pysamstats-0.4.1-cp35-cp35m-linux_armv7l.whl (628 KB) pysamstats-0.4.1-cp35-cp35m-linux_armv6l.whl (628 KB) pysamstats-0.4.1-cp34-cp34m-linux_armv7l.whl (646 KB) pysamstats-0.4.1-cp34-cp34m-linux_armv6l.whl (646 KB)
0.4	2013-01-12
pysamstats-0.4-cp37-cp37m-linux_armv7l.whl (727 KB) pysamstats-0.4-cp37-cp37m-linux_armv6l.whl (727 KB) pysamstats-0.4-cp35-cp35m-linux_armv6l.whl (628 KB) pysamstats-0.4-cp35-cp35m-linux_armv7l.whl (628 KB) pysamstats-0.4-cp34-cp34m-linux_armv7l.whl (645 KB) pysamstats-0.4-cp34-cp34m-linux_armv6l.whl (645 KB)
0.3	2013-01-11
pysamstats-0.3-cp37-cp37m-linux_armv7l.whl (724 KB) pysamstats-0.3-cp37-cp37m-linux_armv6l.whl (724 KB) pysamstats-0.3-cp35-cp35m-linux_armv7l.whl (622 KB) pysamstats-0.3-cp35-cp35m-linux_armv6l.whl (622 KB) pysamstats-0.3-cp34-cp34m-linux_armv7l.whl (641 KB) pysamstats-0.3-cp34-cp34m-linux_armv6l.whl (641 KB)
0.2	2013-01-11
pysamstats-0.2-cp37-cp37m-linux_armv7l.whl (724 KB) pysamstats-0.2-cp37-cp37m-linux_armv6l.whl (724 KB) pysamstats-0.2-cp34-cp34m-linux_armv7l.whl (641 KB) pysamstats-0.2-cp34-cp34m-linux_armv6l.whl (641 KB) pysamstats-0.2-cp35-cp35m-linux_armv7l.whl (628 KB) pysamstats-0.2-cp35-cp35m-linux_armv6l.whl (628 KB)
0.1	2013-01-11

Issues with this package?

• Search issues for this package
• Package or version missing? Open a new issue
• Something else? Open a new issue