scanpy
Single-Cell Analysis in Python.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install scanpy
Dependencies
Releases
| Version | Released | Bookworm Python 3.11 |
Trixie Python 3.13 |
Files |
|---|---|---|---|---|
| 1.13.0a2 pre-release | 2026-08-28 | |||
| 1.13.0a1 pre-release | 2026-07-24 | |||
| 1.12.4 | 2026-08-27 | |||
| 1.12.3 | 2026-07-24 | |||
| 1.12.2 | 2026-06-29 | |||
| 1.12.1 | 2026-04-10 | |||
| 1.12 | 2026-01-23 | |||
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| 1.12.0rc1 pre-release | 2025-11-10 | |||
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| 1.11.5 | 2025-10-21 | |||
| 1.11.4 | 2025-07-30 | |||
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| 1.11.3 | 2025-07-01 | |||
| 1.11.2 | 2025-05-28 | |||
| 1.11.1 | 2025-03-31 | |||
| 1.11.0 | 2025-02-14 | |||
| 1.11.0rc2 pre-release | 2025-01-24 | |||
| 1.11.0rc1 pre-release | 2024-12-20 | |||
| 1.10.4 | 2024-11-12 | |||
| 1.10.3 | 2024-09-17 | |||
| 1.10.2 | 2024-06-25 | |||
| 1.10.1 | 2024-04-09 | |||
| 1.10.0 | 2024-03-26 | |||
| 1.10.0rc2 pre-release | 2024-02-23 | |||
| 1.10.0rc1 pre-release | 2024-02-22 | |||
| 1.9.8 | 2024-01-26 | |||
| 1.9.7 | 2024-01-25 | |||
| 1.9.6 | 2023-10-31 | |||
| 1.9.5 | 2023-09-08 | |||
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| 1.9.4 | 2023-08-24 | |||
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| 1.9.3 | 2023-03-02 | |||
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| 1.9.2 | 2023-02-16 | |||
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| 1.9.1 | 2022-04-05 | |||
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| 1.9.0 | 2022-04-01 | |||
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| 1.8.2 | 2021-11-03 | |||
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| 1.8.1 | 2021-07-07 | |||
| 1.8.0 | 2021-06-29 | |||
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| 1.7.2 | 2021-04-07 | |||
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| 1.7.1 | 2021-02-24 | |||
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| 1.7.0 | 2021-02-03 | |||
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| 1.7.0rc1 pre-release | 2021-01-14 | |||
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| 1.6.1 | 2021-01-14 | |||
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| 1.6.0 | 2020-08-17 | |||
| 1.5.1 | 2020-05-21 | |||
| 1.5.0 | 2020-05-19 | |||
| 1.5.0a1 pre-release | 2020-05-18 | |||
| 1.4.6 | 2020-03-17 | |||
| 1.4.5.1 | 2020-02-13 | |||
| 1.4.5.post3 | 2020-01-24 | |||
| 1.4.5.post2 | 2020-01-09 | |||
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| 1.4.5.post1 | 2020-01-08 | |||
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| 1.4.5 | 2019-12-30 | |||
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| 1.4.4.post1 | 2019-07-29 | |||
| 1.4.4 | 2019-07-20 | |||
| 1.4.3 | 2019-05-14 | |||
| 1.4.2 | 2019-05-06 | |||
| 1.4.1 | 2019-04-26 | |||
| 1.4 | 2019-02-05 | |||
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| 1.3.8 | 2019-02-05 | |||
| 1.3.7 | 2019-01-02 | |||
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| 1.3.6 | 2018-12-11 | |||
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| 1.3.5 | 2018-12-09 | |||
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| 1.3.4 | 2018-11-26 | |||
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| 1.3.3 | 2018-11-05 | |||
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| 1.3.2 | 2018-10-05 | |||
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| 1.3.1 | 2018-09-03 | |||
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| 1.3 | 2018-09-03 | |||
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| 1.2.2 | 2018-06-08 | |||
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| 1.2.1 | 2018-06-08 | |||
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| 1.2.0 | 2018-06-08 | |||
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| 1.1 | 2018-06-01 | |||
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| 1.1a2 pre-release | 2018-05-21 | |||
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| 1.1a1 pre-release | 2018-05-15 | |||
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| 1.0.4 | 2018-04-16 | |||
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| 1.0.3.post1 | 2018-04-16 | |||
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| 1.0.3 | 2018-04-11 | |||
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| 1.0.2 | 2018-04-08 | |||
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| 1.0.1.post1 | 2018-04-16 | |||
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| 1.0.1 | 2018-04-03 | |||
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| 1.0 | 2018-03-29 | |||
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| 0.4.4 | 2018-02-26 | |||
| 0.4.3 | 2018-02-09 | |||
| 0.4.2 | 2018-01-07 | |||
| 0.4.1 | 2018-01-01 | |||
| 0.4 | 2017-12-24 | |||
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| 0.3.2 | 2017-11-29 | |||
| 0.3.1 | 2017-11-17 | |||
| 0.3 | 2017-11-17 | |||
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| 0.2.9.1 | 2017-11-07 | |||
| 0.2.9 | 2017-10-25 | |||
| 0.2.8 | 2017-08-25 | |||
| 0.2.7 | 2017-08-23 | |||
| 0.2.6 | 2017-08-04 | |||
| 0.2.5 | 2017-07-31 | |||
| 0.2.4 | 2017-07-27 | |||
| 0.2.3.5 | 2017-07-25 | |||
| 0.2.3.4 | 2017-07-25 | |||
| 0.2.3 | 2017-07-24 | |||
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| 0.2.1 | 2017-07-24 | |||
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