scprint
scPRINT is a Large Cell Model for Gene Network Inference, Denoising and more from scRNAseq data
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install scprint
Dependencies
- scib
- scipy
- seaborn
- leidenalg
- contourpy
- scikit-learn
- scikit-misc
- jsonargparse
- supabase
- numba
- torchvision
- setuptools
- scdataloader
- scib-metrics
- h5py
- lightning
- owlready2
- wandb
- future
- sparse
- torchdata
- numpy
- typeshed-client
- urllib3
- einops
- rich
- torch
- simpler-flash
- pytorch-lightning
- torchtext
- patsy
- biopython
- attridict
- biomart
- bionty
- pynndescent
- lamindb
- gget
- array-api-compat
- huggingface-hub
- fair-esm
- grnndata
- torchmetrics
- tensorly
- gseapy
- ipykernel
- torchaudio
- matplotlib
- pandas
- bengrn
- hydra-core
- docstring-parser
- d3graph
Releases
| Version | Released | Bullseye Python 3.9 |
Bookworm Python 3.11 |
Trixie Python 3.13 |
Files |
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| 2.3.8 | 2026-02-20 | ||||
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| 2.3.7 | 2026-02-11 | ||||
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| 2.3.6 | 2026-02-11 | ||||
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| 2.3.5 | 2025-08-05 | ||||
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| 2.3.4 | 2025-08-05 | ||||
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| 2.3.3 | 2025-08-05 | ||||
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| 2.3.2 | 2025-08-05 | ||||
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| 2.3.0 | 2025-05-22 | ||||
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| 2.2.2 | 2025-03-14 | ||||
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| 2.2.1 | 2025-03-06 | ||||
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| 2.2.0 | 2025-03-06 | ||||
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| 2.1.1 | 2025-02-10 | ||||
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| 2.1.0 yanked | 2025-01-29 | ||||
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| 2.0.0 yanked | 2025-01-09 | ||||
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| 1.6.4 | 2024-11-27 | ||||
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| 1.6.3 | 2024-11-27 | ||||
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| 1.6.2 | 2024-11-13 | ||||
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| 1.6.1 | 2024-11-13 | ||||
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| 1.1.4 | 2024-09-19 | ||||
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| 1.0.15 | 2024-08-14 | ||||
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| 1.0.13 | 2024-08-11 | ||||
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