scprint
scPRINT is a Large Cell Model for Gene Network Inference, Denoising and more from scRNAseq data
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install scprint
Dependencies
- storage3
- gseapy
- scipy
- patsy
- scdataloader
- simpler-flash
- fair-esm
- matplotlib
- torchtext
- scib
- pandas
- bionty
- seaborn
- biopython
- grnndata
- lightning
- pynndescent
- sparse
- gget
- torchaudio
- einops
- typeshed-client
- rich
- lamindb
- pytorch-lightning
- attridict
- ipykernel
- array-api-compat
- hdbscan
- d3graph
- numba
- tensorly
- wandb
- scikit-learn
- leidenalg
- h5py
- torchvision
- urllib3
- torchmetrics
- biomart
- scikit-misc
- torch
- owlready2
- future
- hydra-core
- jsonargparse
- scib-metrics
- torchdata
- contourpy
- bengrn
- docstring-parser
- numpy
- huggingface-hub
Releases
| Version | Released | Bullseye Python 3.9 |
Bookworm Python 3.11 |
Trixie Python 3.13 |
Files |
|---|---|---|---|---|---|
| 2.3.5 | 2025-08-05 | ||||
|
|||||
| 2.3.4 | 2025-08-05 | ||||
|
|||||
| 2.3.3 | 2025-08-05 | ||||
|
|||||
| 2.3.2 | 2025-08-05 | ||||
|
|||||
| 2.3.0 | 2025-05-22 | ||||
|
|||||
| 2.2.2 | 2025-03-14 | ||||
|
|||||
| 2.2.1 | 2025-03-06 | ||||
|
|||||
| 2.2.0 | 2025-03-06 | ||||
|
|||||
| 2.1.1 | 2025-02-10 | ||||
|
|||||
| 2.1.0 yanked | 2025-01-29 | ||||
|
|||||
| 2.0.0 yanked | 2025-01-09 | ||||
|
|||||
| 1.6.4 | 2024-11-27 | ||||
|
|||||
| 1.6.3 | 2024-11-27 | ||||
|
|||||
| 1.6.2 | 2024-11-13 | ||||
|
|||||
| 1.6.1 | 2024-11-13 | ||||
|
|||||
| 1.1.4 | 2024-09-19 | ||||
|
|
|||||
| 1.0.15 | 2024-08-14 | ||||
|
|
|||||
| 1.0.13 | 2024-08-11 | ||||
|
|
|||||
Issues with this package?
- Search issues for this package
- Package or version missing? Open a new issue
- Something else? Open a new issue