piwheels

singlem

Novelty-inclusive microbial community profiling of shotgun metagenomes

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install singlem

Dependencies

• gtdbtk
• extern
• pandas
• sqlparse
• pip
• pyarrow
• zenodo-backpack
• biopython
• sqlalchemy
• squarify
• jinja2
• seqmagick
• tqdm
• polars
• fastalite
• graftm
• pyranges

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
1.0.0b8 pre-release	2023-09-26
singlem-1.0.0b8-py3-none-any.whl (202 KB)
0.19.0	2025-05-08
singlem-0.19.0-py3-none-any.whl (209 KB)
0.18.3	2024-08-13
singlem-0.18.3-py3-none-any.whl (215 KB)
0.18.2	2024-07-18
singlem-0.18.2-py3-none-any.whl (214 KB)
0.18.1	2024-07-12
singlem-0.18.1-py3-none-any.whl (214 KB)
0.18.0	2024-06-05
singlem-0.18.0-py3-none-any.whl (214 KB)
0.17.0	2024-05-11
singlem-0.17.0-py3-none-any.whl (213 KB)
0.16.0	2023-11-24
singlem-0.16.0-py3-none-any.whl (204 KB)
0.15.1	2023-11-13
singlem-0.15.1-py3-none-any.whl (203 KB)
0.15.0	2023-10-09
singlem-0.15.0-py3-none-any.whl (202 KB)
0.14.0	2023-09-26
singlem-0.14.0-py3-none-any.whl (202 KB)
0.13.2	2020-04-12
singlem-0.13.2-py3-none-any.whl (76 MB)
0.13.1	2020-03-24
singlem-0.13.1-py3-none-any.whl (76 MB)
0.13.0	2019-11-23
singlem-0.13.0-py3-none-any.whl (76 MB)
0.12.1	2019-03-29
0.12.0	2019-02-24
singlem-0.12.0-py3-none-any.whl (76 MB)
0.11.0	2018-07-31
singlem-0.11.0-py3-none-any.whl (76 MB)
0.9.0	2018-02-21
singlem-0.9.0-py3-none-any.whl (43 MB)
0.8.2	2018-01-14
singlem-0.8.2-py3-none-any.whl (43 MB)
0.8.1	2017-08-14
0.8.0	2017-07-14
0.7.1	2017-02-11

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