piwheels

snipgenie

variant calling and phylogenies from microbial WGS data

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install snipgenie

Dependencies

• tqdm
• pyfaidx
• bcbio-gff
• biopython
• pandas
• matplotlib
• numpy
• pyvcf3

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
0.7.0	2025-03-24
snipgenie-0.7.0-py3-none-any.whl (31 MB)
0.6.0	2023-12-15
snipgenie-0.6.0-py3-none-any.whl (31 MB)
0.5.0	2021-11-01
snipgenie-0.5.0-py3-none-any.whl (24 MB)
0.4.0	2021-07-16
snipgenie-0.4.0-py3-none-any.whl (24 MB)

Issues with this package?

• Search issues for this package
• Package or version missing? Open a new issue
• Something else? Open a new issue