piwheels

somaticseq

SomaticSeq: An ensemble approach to accurately detect somatic mutations using SomaticSeq

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install somaticseq

Dependencies

• pybedtools
• pysam
• pandas
• xgboost
• pydantic
• numpy
• scipy

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
3.12.0	2026-04-25
somaticseq-3.12.0-py3-none-any.whl (247 KB)
3.11.1	2025-06-08
somaticseq-3.11.1-py3-none-any.whl (520 KB)
3.11.0	2025-03-18
somaticseq-3.11.0-py3-none-any.whl (520 KB)
3.10.0	2025-01-01
somaticseq-3.10.0-py3-none-any.whl (520 KB)
3.9.1	2024-12-01
somaticseq-3.9.1-py3-none-any.whl (516 KB)
3.9.0	2024-11-29
somaticseq-3.9.0-py3-none-any.whl (515 KB)
3.8.0	2024-07-09
somaticseq-3.8.0-py3-none-any.whl (235 KB)
3.7.4	2024-02-13
somaticseq-3.7.4-py3-none-any.whl (231 KB)
3.7.3	2022-05-04
somaticseq-3.7.3-py3-none-any.whl (224 KB)

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