piwheels

strainge

Strain Genome Explorer: a tool suite for tracking and characterizing low-abundance strains.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install strainge

Dependencies

• scikit-bio
• matplotlib
• scikit-learn
• pysam
• numpy
• h5py
• scipy
• intervaltree

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
1.3.9	2023-11-01
strainge-1.3.9-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.9-cp311-cp311-linux_armv7l.whl (2 MB) strainge-1.3.9-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.9-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3.9-cp313-cp313-linux_armv6l.whl (2 MB) strainge-1.3.9-cp313-cp313-linux_armv7l.whl (2 MB)
1.3.8	2023-09-29
strainge-1.3.8-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.8-cp311-cp311-linux_armv7l.whl (2 MB) strainge-1.3.8-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.8-cp39-cp39-linux_armv7l.whl (2 MB)
1.3.7	2023-01-18
strainge-1.3.7-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.7-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3.7-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.7-cp311-cp311-linux_armv7l.whl (2 MB)
1.3.6	2023-01-12
strainge-1.3.6-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.6-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3.6-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.6-cp311-cp311-linux_armv7l.whl (2 MB)
1.3.5	2023-01-11
strainge-1.3.5-cp37-cp37m-linux_armv6l.whl (895 KB) strainge-1.3.5-cp37-cp37m-linux_armv7l.whl (895 KB) strainge-1.3.5-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.5-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3.5-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.5-cp311-cp311-linux_armv7l.whl (2 MB)
1.3.4	2023-01-11
strainge-1.3.4-cp37-cp37m-linux_armv6l.whl (895 KB) strainge-1.3.4-cp37-cp37m-linux_armv7l.whl (895 KB) strainge-1.3.4-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.4-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3.4-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.4-cp311-cp311-linux_armv7l.whl (2 MB)
1.3.3	2022-08-03
strainge-1.3.3-cp37-cp37m-linux_armv6l.whl (894 KB) strainge-1.3.3-cp37-cp37m-linux_armv7l.whl (894 KB) strainge-1.3.3-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.3-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3.3-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.3-cp311-cp311-linux_armv7l.whl (2 MB)
1.3.2	2022-06-03
strainge-1.3.2-cp37-cp37m-linux_armv6l.whl (873 KB) strainge-1.3.2-cp37-cp37m-linux_armv7l.whl (873 KB) strainge-1.3.2-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.2-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3.2-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.2-cp311-cp311-linux_armv7l.whl (2 MB)
1.3.1	2022-06-01
strainge-1.3.1-cp37-cp37m-linux_armv6l.whl (873 KB) strainge-1.3.1-cp37-cp37m-linux_armv7l.whl (873 KB) strainge-1.3.1-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3.1-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3.1-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3.1-cp311-cp311-linux_armv7l.whl (2 MB)
1.3	2022-04-15
strainge-1.3-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.3-cp39-cp39-linux_armv7l.whl (2 MB) strainge-1.3-cp37-cp37m-linux_armv6l.whl (873 KB) strainge-1.3-cp37-cp37m-linux_armv7l.whl (873 KB) strainge-1.3-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.3-cp311-cp311-linux_armv7l.whl (2 MB)
1.2	2021-12-02
strainge-1.2-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.2-cp311-cp311-linux_armv7l.whl (2 MB) strainge-1.2-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.2-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.2-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.2-cp39-cp39-linux_armv7l.whl (2 MB)
1.1.5	2021-11-04
strainge-1.1.5-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.1.5-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.1.5-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.1.5-cp39-cp39-linux_armv7l.whl (2 MB)
1.1.4.1	2021-04-16
strainge-1.1.4.1-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.1.4.1-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.1.4.1-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.1.4.1-cp39-cp39-linux_armv7l.whl (2 MB)
1.1.4	2021-04-16
strainge-1.1.4-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.1.4-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.1.4-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.1.4-cp39-cp39-linux_armv7l.whl (2 MB)
1.1.3	2021-04-14
strainge-1.1.3-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.1.3-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.1.3-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.1.3-cp39-cp39-linux_armv7l.whl (2 MB)
1.1.2	2021-04-13
strainge-1.1.2-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.1.2-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.1.2-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.1.2-cp39-cp39-linux_armv7l.whl (2 MB)
1.1.1	2021-04-12
strainge-1.1.1-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.1.1-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.1.1-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.1.1-cp39-cp39-linux_armv7l.whl (2 MB)
1.1	2021-04-12
strainge-1.1-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.1-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.1-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.1-cp39-cp39-linux_armv7l.whl (2 MB)
1.0.3	2021-03-03
strainge-1.0.3-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.0.3-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.0.3-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.0.3-cp311-cp311-linux_armv7l.whl (2 MB) strainge-1.0.3-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.0.3-cp39-cp39-linux_armv7l.whl (2 MB)
1.0.2	2021-02-11
strainge-1.0.2-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.0.2-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.0.2-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.0.2-cp311-cp311-linux_armv7l.whl (2 MB) strainge-1.0.2-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.0.2-cp39-cp39-linux_armv7l.whl (2 MB)
1.0	2021-02-10
strainge-1.0-cp37-cp37m-linux_armv6l.whl (2 MB) strainge-1.0-cp37-cp37m-linux_armv7l.whl (2 MB) strainge-1.0-cp311-cp311-linux_armv6l.whl (2 MB) strainge-1.0-cp311-cp311-linux_armv7l.whl (2 MB) strainge-1.0-cp39-cp39-linux_armv6l.whl (2 MB) strainge-1.0-cp39-cp39-linux_armv7l.whl (2 MB)

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