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stringMLST

Fast k-mer based tool for alignment and assembly-free multi locus sequence typing (MLST) directly from genome sequencing reads.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install stringmlst

Dependencies

• pyfaidx
• lxml

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
0.6.3	2020-09-02
stringMLST-0.6.3-py3-none-any.whl (18 KB)
0.6.2	2019-04-04
stringMLST-0.6.2-py3-none-any.whl (25 KB)
0.6.1	2019-03-05
stringMLST-0.6.1-py3-none-any.whl (25 KB)
0.5.2	2019-01-07
0.5.1.2.1	2018-07-26
stringMLST-0.5.1.2.1-py3-none-any.whl (19 KB)
0.5.1.2	2018-01-05
stringMLST-0.5.1.2-py3-none-any.whl (20 KB)
0.4.2.0	2017-09-13
stringMLST-0.4.2.0-py3-none-any.whl (26 KB)
0.4.1	2017-05-21
stringMLST-0.4.1-py3-none-any.whl (35 KB)
0.4	2017-05-17
stringMLST-0.4-py3-none-any.whl (35 KB)
0.3.7	2017-04-22
stringMLST-0.3.7-py3-none-any.whl (35 KB)
0.3.6.2	2017-03-18
stringMLST-0.3.6.2-py3-none-any.whl (16 KB)
0.3.6.1	2017-02-27
stringMLST-0.3.6.1-py3-none-any.whl (16 KB)
0.3.6	2017-02-17
stringMLST-0.3.6-py3-none-any.whl (16 KB)
0.3.5	2017-02-16
stringMLST-0.3.5-py3-none-any.whl (16 KB)

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