piwheels

tb-variant-filter

This tool offers multiple options for filtering variants (in VCF files, relative to M. tuberculosis H37Rv).

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install tb-variant-filter

Dependencies

• neo4j
• lxml
• pandas
• intervaltree
• vcfpy
• requests

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
0.4.0	2023-08-10
tb_variant_filter-0.4.0-py3-none-any.whl (74 KB)
0.3.6	2022-12-18
tb_variant_filter-0.3.6-py3-none-any.whl (73 KB)
0.3.5	2021-05-28
tb_variant_filter-0.3.5-py3-none-any.whl (97 KB)
0.3.4	2021-05-28
tb_variant_filter-0.3.4-py3-none-any.whl (97 KB)
0.3.3	2021-05-28
tb_variant_filter-0.3.3-py3-none-any.whl (97 KB)
0.3.2	2021-05-28
tb_variant_filter-0.3.2-py3-none-any.whl (56 KB)
0.3.1	2021-05-28
tb_variant_filter-0.3.1-py3-none-any.whl (50 KB)

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