tiatoolbox
Computational pathology toolbox developed by TIA Centre.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install tiatoolbox
Dependencies
- wsidicom
- filelock
- torch
- ipywidgets
- albumentations
- jupyterlab
- glymur
- matplotlib
- timm
- pandas
- pillow
- transformers
- zarr
- umap-learn
- openslide-python
- aiohttp
- requests
- bokeh
- huggingface-hub
- sphinx
- numpy
- scipy
- tqdm
- defusedxml
- openslide-bin
- scikit-learn
- torchvision
- simpleitk
- flask
- dask
- tifffile
- joblib
- click
- numba
- flask-cors
- shapely
- opencv-python
- imagecodecs
- pyyaml
- pydicom
- scikit-image
Releases
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