tiatoolbox
Computational pathology toolbox developed by TIA Centre.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install tiatoolbox
Dependencies
- torch
- albumentations
- bokeh
- torchvision
- imagecodecs
- requests
- numba
- scikit-image
- sphinx
- umap-learn
- simsimd
- numpy
- flask
- flask-cors
- opencv-python
- huggingface-hub
- timm
- ipywidgets
- click
- pydicom
- tqdm
- tifffile
- zarr
- shapely
- matplotlib
- openslide-python
- simpleitk
- transformers
- pyyaml
- glymur
- pillow
- defusedxml
- scikit-learn
- dask
- jupyterlab
- wsidicom
- scipy
- filelock
- pandas
- aiohttp
- s3fs
- openslide-bin
- joblib
Releases
Issues with this package?
- Search issues for this package
- Package or version missing? Open a new issue
- Something else? Open a new issue