tiatoolbox
Computational pathology toolbox developed by TIA Centre.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install tiatoolbox
Dependencies
- filelock
- tqdm
- flask-cors
- matplotlib
- scipy
- umap-learn
- zarr
- flask
- jupyterlab
- glymur
- imagecodecs
- transformers
- click
- pillow
- aiohttp
- torchvision
- bokeh
- dask
- huggingface-hub
- torch
- numpy
- wsidicom
- ipywidgets
- joblib
- timm
- requests
- openslide-bin
- numba
- pyyaml
- defusedxml
- opencv-python
- sphinx
- pydicom
- openslide-python
- s3fs
- simpleitk
- scikit-learn
- pandas
- tifffile
- scikit-image
- shapely
Releases
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