piwheels

treesapp

TreeSAPP is a functional and taxonomic annotation tool for genomes and metagenomes.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install treesapp

Dependencies

• pyfastx
• ete3
• pandas
• joblib
• biopython
• tqdm
• pytest
• six
• numpy
• matplotlib
• packaging
• pygtrie
• samsum
• scipy
• seaborn
• scikit-learn

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
0.11.4	2022-06-01
treesapp-0.11.4-cp37-cp37m-linux_armv6l.whl (11 MB) treesapp-0.11.4-cp37-cp37m-linux_armv7l.whl (11 MB) treesapp-0.11.4-cp39-cp39-linux_armv6l.whl (11 MB) treesapp-0.11.4-cp39-cp39-linux_armv7l.whl (11 MB) treesapp-0.11.4-cp311-cp311-linux_armv6l.whl (11 MB) treesapp-0.11.4-cp311-cp311-linux_armv7l.whl (11 MB) treesapp-0.11.4-cp313-cp313-linux_armv6l.whl (11 MB) treesapp-0.11.4-cp313-cp313-linux_armv7l.whl (11 MB)
0.11.3	2021-12-14
treesapp-0.11.3-cp311-cp311-linux_armv6l.whl (11 MB) treesapp-0.11.3-cp311-cp311-linux_armv7l.whl (11 MB) treesapp-0.11.3-cp37-cp37m-linux_armv6l.whl (11 MB) treesapp-0.11.3-cp37-cp37m-linux_armv7l.whl (11 MB) treesapp-0.11.3-cp39-cp39-linux_armv6l.whl (11 MB) treesapp-0.11.3-cp39-cp39-linux_armv7l.whl (11 MB) treesapp-0.11.3-cp313-cp313-linux_armv6l.whl (11 MB) treesapp-0.11.3-cp313-cp313-linux_armv7l.whl (11 MB)
0.11.2	2021-06-12
treesapp-0.11.2-cp311-cp311-linux_armv6l.whl (11 MB) treesapp-0.11.2-cp311-cp311-linux_armv7l.whl (11 MB) treesapp-0.11.2-cp37-cp37m-linux_armv6l.whl (11 MB) treesapp-0.11.2-cp37-cp37m-linux_armv7l.whl (11 MB) treesapp-0.11.2-cp39-cp39-linux_armv6l.whl (11 MB) treesapp-0.11.2-cp39-cp39-linux_armv7l.whl (11 MB) treesapp-0.11.2-cp313-cp313-linux_armv6l.whl (11 MB) treesapp-0.11.2-cp313-cp313-linux_armv7l.whl (11 MB)
0.11.0	2021-04-27
treesapp-0.11.0-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.11.0-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.11.0-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.11.0-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.11.0-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.11.0-cp39-cp39-linux_armv7l.whl (10 MB)
0.10.4	2021-03-25
treesapp-0.10.4-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.10.4-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.10.4-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.10.4-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.10.4-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.10.4-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.10.4-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.10.4-cp313-cp313-linux_armv7l.whl (10 MB)
0.10.3	2021-03-23
treesapp-0.10.3-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.10.3-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.10.3-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.10.3-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.10.3-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.10.3-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.10.3-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.10.3-cp313-cp313-linux_armv7l.whl (10 MB)
0.10.2	2021-03-08
treesapp-0.10.2-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.10.2-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.10.2-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.10.2-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.10.2-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.10.2-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.10.2-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.10.2-cp313-cp313-linux_armv7l.whl (10 MB)
0.10.1	2021-02-15
treesapp-0.10.1-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.10.1-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.10.1-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.10.1-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.10.1-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.10.1-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.10.1-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.10.1-cp313-cp313-linux_armv7l.whl (10 MB)
0.10.0	2021-02-09
treesapp-0.10.0-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.10.0-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.10.0-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.10.0-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.10.0-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.10.0-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.10.0-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.10.0-cp313-cp313-linux_armv7l.whl (10 MB)
0.9.8	2021-01-15
treesapp-0.9.8-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.8-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.8-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.8-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.8-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.8-cp39-cp39-linux_armv7l.whl (10 MB)
0.9.7	2021-01-06
treesapp-0.9.7-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.7-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.7-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.7-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.7-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.7-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.9.7-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.9.7-cp313-cp313-linux_armv7l.whl (10 MB)
0.9.6	2020-12-10
treesapp-0.9.6-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.6-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.6-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.6-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.6-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.6-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.9.6-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.9.6-cp313-cp313-linux_armv7l.whl (10 MB)
0.9.5	2020-11-17
treesapp-0.9.5-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.5-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.5-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.5-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.5-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.5-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.9.5-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.9.5-cp313-cp313-linux_armv7l.whl (10 MB)
0.9.4	2020-11-15
treesapp-0.9.4-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.4-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.4-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.4-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.4-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.4-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.9.4-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.9.4-cp313-cp313-linux_armv7l.whl (10 MB)
0.9.3	2020-11-13
treesapp-0.9.3-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.3-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.3-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.3-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.3-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.3-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.9.3-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.9.3-cp313-cp313-linux_armv7l.whl (10 MB)
0.9.2	2020-10-06
treesapp-0.9.2-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.2-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.2-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.2-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.2-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.2-cp39-cp39-linux_armv7l.whl (10 MB)
0.9.1	2020-09-23
treesapp-0.9.1-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.1-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.1-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.1-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.1-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.1-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.9.1-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.9.1-cp313-cp313-linux_armv7l.whl (10 MB)
0.9.0	2020-09-15
treesapp-0.9.0-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.9.0-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.9.0-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.9.0-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.9.0-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.9.0-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.9.0-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.9.0-cp313-cp313-linux_armv7l.whl (10 MB)
0.8.9	2020-09-08
treesapp-0.8.9-cp37-cp37m-linux_armv6l.whl (10 MB) treesapp-0.8.9-cp37-cp37m-linux_armv7l.whl (10 MB) treesapp-0.8.9-cp311-cp311-linux_armv6l.whl (10 MB) treesapp-0.8.9-cp311-cp311-linux_armv7l.whl (10 MB) treesapp-0.8.9-cp39-cp39-linux_armv6l.whl (10 MB) treesapp-0.8.9-cp39-cp39-linux_armv7l.whl (10 MB) treesapp-0.8.9-cp313-cp313-linux_armv6l.whl (10 MB) treesapp-0.8.9-cp313-cp313-linux_armv7l.whl (10 MB)
0.6.8	2020-05-02
treesapp-0.6.8-cp35-cp35m-linux_armv6l.whl (7 MB) treesapp-0.6.8-cp35-cp35m-linux_armv7l.whl (7 MB) treesapp-0.6.8-cp37-cp37m-linux_armv6l.whl (7 MB) treesapp-0.6.8-cp37-cp37m-linux_armv7l.whl (7 MB) treesapp-0.6.8-cp34-cp34m-linux_armv7l.whl (7 MB) treesapp-0.6.8-cp34-cp34m-linux_armv6l.whl (7 MB) treesapp-0.6.8-cp39-cp39-linux_armv6l.whl (7 MB) treesapp-0.6.8-cp39-cp39-linux_armv7l.whl (7 MB) treesapp-0.6.8-cp311-cp311-linux_armv6l.whl (7 MB) treesapp-0.6.8-cp311-cp311-linux_armv7l.whl (7 MB) treesapp-0.6.8-cp313-cp313-linux_armv6l.whl (7 MB) treesapp-0.6.8-cp313-cp313-linux_armv7l.whl (7 MB)
0.6.7	2020-04-05
treesapp-0.6.7-cp35-cp35m-linux_armv6l.whl (7 MB) treesapp-0.6.7-cp35-cp35m-linux_armv7l.whl (7 MB) treesapp-0.6.7-cp37-cp37m-linux_armv6l.whl (7 MB) treesapp-0.6.7-cp37-cp37m-linux_armv7l.whl (7 MB) treesapp-0.6.7-cp39-cp39-linux_armv6l.whl (7 MB) treesapp-0.6.7-cp39-cp39-linux_armv7l.whl (7 MB) treesapp-0.6.7-cp311-cp311-linux_armv6l.whl (7 MB) treesapp-0.6.7-cp311-cp311-linux_armv7l.whl (7 MB) treesapp-0.6.7-cp313-cp313-linux_armv6l.whl (7 MB) treesapp-0.6.7-cp313-cp313-linux_armv7l.whl (7 MB)
0.6.6	2020-04-03
treesapp-0.6.6-cp35-cp35m-linux_armv6l.whl (7 MB) treesapp-0.6.6-cp35-cp35m-linux_armv7l.whl (7 MB) treesapp-0.6.6-cp34-cp34m-linux_armv6l.whl (7 MB) treesapp-0.6.6-cp34-cp34m-linux_armv7l.whl (7 MB) treesapp-0.6.6-cp37-cp37m-linux_armv7l.whl (7 MB) treesapp-0.6.6-cp37-cp37m-linux_armv6l.whl (7 MB) treesapp-0.6.6-cp39-cp39-linux_armv6l.whl (7 MB) treesapp-0.6.6-cp39-cp39-linux_armv7l.whl (7 MB) treesapp-0.6.6-cp311-cp311-linux_armv6l.whl (7 MB) treesapp-0.6.6-cp311-cp311-linux_armv7l.whl (7 MB) treesapp-0.6.6-cp313-cp313-linux_armv6l.whl (7 MB) treesapp-0.6.6-cp313-cp313-linux_armv7l.whl (7 MB)
0.6.5	2020-03-31
treesapp-0.6.5-cp34-cp34m-linux_armv7l.whl (7 MB) treesapp-0.6.5-cp34-cp34m-linux_armv6l.whl (7 MB) treesapp-0.6.5-cp35-cp35m-linux_armv6l.whl (7 MB) treesapp-0.6.5-cp35-cp35m-linux_armv7l.whl (7 MB) treesapp-0.6.5-cp37-cp37m-linux_armv7l.whl (7 MB) treesapp-0.6.5-cp37-cp37m-linux_armv6l.whl (7 MB) treesapp-0.6.5-cp39-cp39-linux_armv6l.whl (7 MB) treesapp-0.6.5-cp39-cp39-linux_armv7l.whl (7 MB) treesapp-0.6.5-cp311-cp311-linux_armv6l.whl (7 MB) treesapp-0.6.5-cp311-cp311-linux_armv7l.whl (7 MB) treesapp-0.6.5-cp313-cp313-linux_armv6l.whl (7 MB) treesapp-0.6.5-cp313-cp313-linux_armv7l.whl (7 MB)

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