piwheels

vespa-effect

Predictor for single-amino acid variant effects in protein sequences (https://doi.org/10.1007/s00439-021-02411-y)

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install vespa-effect

Dependencies

• torch
• tqdm
• biopython
• transformers
• scikit-learn
• numpy
• h5py
• sentencepiece
• pyfaidx

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
1.0.2	2023-03-16
vespa_effect-1.0.2-py3-none-any.whl (3 MB)
1.0.1	2022-06-30
vespa_effect-1.0.1-py3-none-any.whl (3 MB)
1.0.0	2022-03-14
vespa_effect-1.0.0-py3-none-any.whl (3 MB)

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