piwheels

whatshap

phase genomic variants using DNA sequencing reads

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install whatshap

Dependencies

• biopython
• xopen
• pysam
• networkx
• pyvcf
• typing
• pyfaidx

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
2.8	2025-06-09
2.7	2025-05-27
2.6 yanked	2025-04-11
2.5	2025-04-03
2.4	2025-01-22
2.3	2024-05-05
2.2	2024-01-26
2.1	2023-10-17
2.0	2023-06-30
1.7	2022-12-01
1.6	2022-09-06
1.5	2022-08-22
1.4	2022-04-07
1.3	2022-03-11
1.2.1	2021-12-07
1.2 yanked	2021-12-06
1.1	2021-04-08
1.0	2020-06-24
0.18	2019-02-15
whatshap-0.18-cp37-cp37m-linux_armv6l.whl (3 MB) whatshap-0.18-cp37-cp37m-linux_armv7l.whl (3 MB) whatshap-0.18-cp34-cp34m-linux_armv7l.whl (2 MB) whatshap-0.18-cp34-cp34m-linux_armv6l.whl (2 MB) whatshap-0.18-cp35-cp35m-linux_armv7l.whl (2 MB) whatshap-0.18-cp35-cp35m-linux_armv6l.whl (2 MB)
0.17	2018-07-20
whatshap-0.17-cp37-cp37m-linux_armv7l.whl (3 MB) whatshap-0.17-cp37-cp37m-linux_armv6l.whl (3 MB) whatshap-0.17-cp35-cp35m-linux_armv7l.whl (2 MB) whatshap-0.17-cp35-cp35m-linux_armv6l.whl (2 MB) whatshap-0.17-cp34-cp34m-linux_armv6l.whl (2 MB) whatshap-0.17-cp34-cp34m-linux_armv7l.whl (2 MB)
0.16	2018-05-22
whatshap-0.16-cp34-cp34m-linux_armv6l.whl (2 MB) whatshap-0.16-cp34-cp34m-linux_armv7l.whl (2 MB) whatshap-0.16-cp35-cp35m-linux_armv7l.whl (2 MB) whatshap-0.16-cp35-cp35m-linux_armv6l.whl (2 MB)
0.15	2018-04-07
whatshap-0.15-cp37-cp37m-linux_armv6l.whl (3 MB) whatshap-0.15-cp37-cp37m-linux_armv7l.whl (3 MB) whatshap-0.15-cp35-cp35m-linux_armv7l.whl (2 MB) whatshap-0.15-cp35-cp35m-linux_armv6l.whl (2 MB) whatshap-0.15-cp34-cp34m-linux_armv6l.whl (2 MB) whatshap-0.15-cp34-cp34m-linux_armv7l.whl (2 MB)
0.14.1	2017-07-07
whatshap-0.14.1-cp34-cp34m-linux_armv7l.whl (2 MB) whatshap-0.14.1-cp34-cp34m-linux_armv6l.whl (2 MB) whatshap-0.14.1-cp35-cp35m-linux_armv7l.whl (2 MB) whatshap-0.14.1-cp35-cp35m-linux_armv6l.whl (2 MB)
0.14	2017-07-06
whatshap-0.14-cp35-cp35m-linux_armv7l.whl (2 MB) whatshap-0.14-cp35-cp35m-linux_armv6l.whl (2 MB) whatshap-0.14-cp34-cp34m-linux_armv7l.whl (2 MB) whatshap-0.14-cp34-cp34m-linux_armv6l.whl (2 MB)
0.13	2016-10-27
whatshap-0.13-cp35-cp35m-linux_armv6l.whl (1 MB) whatshap-0.13-cp35-cp35m-linux_armv7l.whl (1 MB) whatshap-0.13-cp34-cp34m-linux_armv7l.whl (1 MB) whatshap-0.13-cp34-cp34m-linux_armv6l.whl (1 MB)
0.12	2016-07-01
whatshap-0.12-cp35-cp35m-linux_armv7l.whl (2 MB) whatshap-0.12-cp35-cp35m-linux_armv6l.whl (2 MB) whatshap-0.12-cp34-cp34m-linux_armv6l.whl (2 MB) whatshap-0.12-cp34-cp34m-linux_armv7l.whl (2 MB)
0.11	2016-06-09
whatshap-0.11-cp34-cp34m-linux_armv7l.whl (1 MB) whatshap-0.11-cp34-cp34m-linux_armv6l.whl (1 MB) whatshap-0.11-cp35-cp35m-linux_armv7l.whl (2 MB) whatshap-0.11-cp35-cp35m-linux_armv6l.whl (2 MB)
0.10	2016-04-27
whatshap-0.10-cp34-cp34m-linux_armv7l.whl (1 MB) whatshap-0.10-cp34-cp34m-linux_armv6l.whl (1 MB)
0.9	2016-01-05
whatshap-0.9-cp34-cp34m-linux_armv7l.whl (769 KB) whatshap-0.9-cp34-cp34m-linux_armv6l.whl (769 KB) whatshap-0.9-cp35-cp35m-linux_armv6l.whl (782 KB) whatshap-0.9-cp35-cp35m-linux_armv7l.whl (782 KB)

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