zither

Command-line tool to pull raw depths and alt freqs from BAM file(s) based on an existing VCF, writing output as new VCF to stdout.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install zither

Releases

Version Released Buster
Python 3.7
Bullseye
Python 3.9
Bookworm
Python 3.11
Files
0.2 2015-09-03      

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Page last updated 2023-10-28 01:43:45 UTC