 }}){kind=logo}
{% if github_repo_release_url %}
{% endif %}
 }})
{{ command_builder_manuscript_labels.get('abinit', 'paper')|e }}
{% endif %}
{{ command_builder_manuscript_labels.get('abinit', 'paper')|e }}
{% set ns_nav = namespace(cls='nav-center-row') %}
{% if not discovered_workdirs or discovered_workdirs|length == 0 %}
{% set ns_nav.cls = ns_nav.cls ~ ' nav-center-row--solo' %}
{% elif command_builder_only %}
{% set ns_nav.cls = ns_nav.cls ~ ' nav-center-row--outdir-only' %}
{% endif %}
{% if command_builder_page_mode %}
{% if discovered_workdirs and discovered_workdirs|length > 0 %}
{% set _launch_scroll = config.get('COMMAND_BUILDER_ONLY') and request.endpoint == 'index' %}
{% endif %}
{% if _launch_scroll %}
Output folders (cwd)
{% else %}
{% endif %}
{% endif %}
{% if command_builder_page_mode %}
-
{% for wd in discovered_workdir_options %}
- {% endfor %}
{% block nav_reconstruction_command %}{% endblock %}
{% elif not command_builder_only %}
{% if cfg_train_command %}
{% set _nav_cmd_title = cfg_train_command|e %}
{% else %}
{% set _nav_cmd_title = cfg_model_type|e ~ ' z' ~ (cfg_zdim|string) %}
{% endif %}
{% elif not discovered_workdirs or discovered_workdirs|length == 0 %}
{% for line in cfg_cmd_display_lines %}
{% set ns_cmd = namespace(cls='nav-cmd-line') %}
{% if cfg_train_command and loop.index0 == 0 %}
{% set ns_cmd.cls = ns_cmd.cls ~ ' nav-cmd-line--head' %}
{% elif cfg_train_command and loop.index0 > 0 %}
{% set ns_cmd.cls = ns_cmd.cls ~ ' nav-cmd-line--tail' %}
{% endif %}
{% if cfg_cmd_display_lines|length == 1 %}
{% set ns_cmd.cls = ns_cmd.cls ~ ' nav-cmd-multiline--fallback' %}
{% endif %}
{{ line|e }}
{% endfor %}
{% for line in cfg_cmd_display_lines %}
{% set ns_fb = namespace(cls='nav-cmd-line') %}
{% if cfg_cmd_display_lines|length == 1 %}
{% set ns_fb.cls = ns_fb.cls ~ ' nav-cmd-multiline--fallback' %}
{% endif %}
{{ line|e }}
{% endfor %}
{{ command_builder_command_docs.get('abinit', '')|e }}
{% if chimerax_dashboard_path_ui and command_builder_only %}
{% endif %}
{% if not command_builder_only %}
{% endif %}
{% endif %}
{% endif %}
{% if chimerax_dashboard_path_ui %}
{% else %}
{% if exp_epoch_output_stamp or exp_run_log_cryodrgn_version %}
{% endif %}
{% if exp_epoch_output_stamp or exp_run_log_cryodrgn_version %}
{% if exp_epoch_output_stamp %}
analyze.{{ exp_epoch }} updated {{ exp_epoch_output_stamp|e }}
{% endif %}
{% if exp_run_log_cryodrgn_version %}
trained with cryoDRGN v{{ exp_run_log_cryodrgn_version_short|e }}
{% endif %}
{% endif %}
{% if exp_epoch_output_stamp %}
analyze.{{ exp_epoch }} updated {{ exp_epoch_output_stamp|e }}
{% endif %}
{% if exp_run_log_cryodrgn_version %}
trained with cryoDRGN v{{ exp_run_log_cryodrgn_version_short|e }}
{% endif %}
{% endif %}
k-means {{ exp_kmeans }}
ChimeraX executable
The dashboard was started without CHIMERAX_PATH. Set the full path to the
ChimeraX binary here for this session (saved in your browser cookie). For a permanent
default, export CHIMERAX_PATH in your shell before launching the dashboard.