AnnSQL

A Python SQL tool for converting Anndata objects to a relational DuckDb database. Methods are included for querying and basic single-cell preprocessing (experimental).

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install annsql

Dependencies

Releases

Version Released Bullseye
Python 3.9
Bookworm
Python 3.11
Trixie
Python 3.13
Files
1.0.3 2025-05-10
1.0.2 2025-04-10      
1.0.1 2025-03-12      
1.0.0 2025-03-11      
0.9.9.1 2025-02-14      
0.9.9 2024-11-13
0.9.8 2024-11-02      
0.9.7 2024-11-02      
0.9.6 2024-11-02      
0.9.5 2024-11-02      
0.9.4 2024-11-02      
0.9.3 2024-11-02      
0.9.2 2024-11-02      
0.9.1 2024-11-02      
0.9.0 2024-11-02      

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Page last updated 2025-09-16 23:32:48 UTC