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dinopy

DNA input and output library for Python and Cython. Includes reader and writer for FASTA and FASTQ files, support for samtools faidx files, and generators for solid and gapped q-grams (k-mers).

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install dinopy

Dependencies

• cython
• numpy

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
3.0.0	2024-04-03
dinopy-3.0.0-cp311-cp311-linux_armv6l.whl (7 MB) dinopy-3.0.0-cp311-cp311-linux_armv7l.whl (7 MB) dinopy-3.0.0-cp37-cp37m-linux_armv6l.whl (2 MB) dinopy-3.0.0-cp37-cp37m-linux_armv7l.whl (2 MB) dinopy-3.0.0-cp39-cp39-linux_armv6l.whl (6 MB) dinopy-3.0.0-cp39-cp39-linux_armv7l.whl (6 MB)
2.2.1	2022-03-27
dinopy-2.2.1-cp35-cp35m-linux_armv6l.whl (4 MB) dinopy-2.2.1-cp35-cp35m-linux_armv7l.whl (4 MB) dinopy-2.2.1-cp37-cp37m-linux_armv6l.whl (2 MB) dinopy-2.2.1-cp37-cp37m-linux_armv7l.whl (2 MB) dinopy-2.2.1-cp39-cp39-linux_armv6l.whl (6 MB) dinopy-2.2.1-cp39-cp39-linux_armv7l.whl (6 MB)
2.2.0	2020-04-22
dinopy-2.2.0-cp35-cp35m-linux_armv7l.whl (4 MB) dinopy-2.2.0-cp35-cp35m-linux_armv6l.whl (4 MB) dinopy-2.2.0-cp37-cp37m-linux_armv6l.whl (5 MB) dinopy-2.2.0-cp37-cp37m-linux_armv7l.whl (5 MB) dinopy-2.2.0-cp39-cp39-linux_armv6l.whl (6 MB) dinopy-2.2.0-cp39-cp39-linux_armv7l.whl (6 MB)
2.1.0	2020-04-16
dinopy-2.1.0-cp34-cp34m-linux_armv7l.whl (6 MB) dinopy-2.1.0-cp34-cp34m-linux_armv6l.whl (6 MB) dinopy-2.1.0-cp35-cp35m-linux_armv6l.whl (5 MB) dinopy-2.1.0-cp35-cp35m-linux_armv7l.whl (5 MB) dinopy-2.1.0-cp37-cp37m-linux_armv7l.whl (6 MB) dinopy-2.1.0-cp37-cp37m-linux_armv6l.whl (6 MB) dinopy-2.1.0-cp39-cp39-linux_armv6l.whl (7 MB) dinopy-2.1.0-cp39-cp39-linux_armv7l.whl (7 MB)
2.0.3	2019-11-04
dinopy-2.0.3-cp34-cp34m-linux_armv6l.whl (6 MB) dinopy-2.0.3-cp34-cp34m-linux_armv7l.whl (6 MB) dinopy-2.0.3-cp35-cp35m-linux_armv6l.whl (5 MB) dinopy-2.0.3-cp35-cp35m-linux_armv7l.whl (5 MB) dinopy-2.0.3-cp37-cp37m-linux_armv7l.whl (6 MB) dinopy-2.0.3-cp37-cp37m-linux_armv6l.whl (6 MB)
2.0.2	2019-10-22
dinopy-2.0.2-cp34-cp34m-linux_armv7l.whl (6 MB) dinopy-2.0.2-cp34-cp34m-linux_armv6l.whl (6 MB) dinopy-2.0.2-cp35-cp35m-linux_armv6l.whl (5 MB) dinopy-2.0.2-cp35-cp35m-linux_armv7l.whl (5 MB) dinopy-2.0.2-cp37-cp37m-linux_armv6l.whl (6 MB) dinopy-2.0.2-cp37-cp37m-linux_armv7l.whl (6 MB)
2.0.1	2018-08-17
dinopy-2.0.1-cp37-cp37m-linux_armv6l.whl (6 MB) dinopy-2.0.1-cp37-cp37m-linux_armv7l.whl (6 MB) dinopy-2.0.1-cp35-cp35m-linux_armv7l.whl (5 MB) dinopy-2.0.1-cp35-cp35m-linux_armv6l.whl (5 MB) dinopy-2.0.1-cp34-cp34m-linux_armv6l.whl (6 MB) dinopy-2.0.1-cp34-cp34m-linux_armv7l.whl (6 MB)
2.0.0	2017-04-20
dinopy-2.0.0-cp35-cp35m-linux_armv6l.whl (5 MB) dinopy-2.0.0-cp35-cp35m-linux_armv7l.whl (5 MB) dinopy-2.0.0-cp34-cp34m-linux_armv6l.whl (5 MB) dinopy-2.0.0-cp34-cp34m-linux_armv7l.whl (5 MB)
1.2.1	2016-05-12
dinopy-1.2.1-cp35-cp35m-linux_armv6l.whl (3 MB) dinopy-1.2.1-cp35-cp35m-linux_armv7l.whl (3 MB) dinopy-1.2.1-cp34-cp34m-linux_armv6l.whl (4 MB) dinopy-1.2.1-cp34-cp34m-linux_armv7l.whl (4 MB)
1.2.0	2016-01-07
dinopy-1.2.0-cp34-cp34m-linux_armv6l.whl (4 MB) dinopy-1.2.0-cp34-cp34m-linux_armv7l.whl (4 MB) dinopy-1.2.0-cp35-cp35m-linux_armv6l.whl (3 MB) dinopy-1.2.0-cp35-cp35m-linux_armv7l.whl (3 MB)
1.1.1	2015-11-23
dinopy-1.1.1-cp35-cp35m-linux_armv7l.whl (3 MB) dinopy-1.1.1-cp35-cp35m-linux_armv6l.whl (3 MB) dinopy-1.1.1-cp34-cp34m-linux_armv6l.whl (3 MB) dinopy-1.1.1-cp34-cp34m-linux_armv7l.whl (3 MB)

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