piwheels

hapROH

Identify runs of homozygosity (hapROH) and contamination (hapCon) in ancient human DNA data

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install haproh

Dependencies

• psutil
• numdifftools
• numpy
• h5py
• pandas
• scipy

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
0.70	2025-10-15
haproh-0.70-cp311-cp311-linux_armv6l.whl (1 MB) haproh-0.70-cp311-cp311-linux_armv7l.whl (1 MB) haproh-0.70-cp39-cp39-linux_armv6l.whl (1 MB) haproh-0.70-cp39-cp39-linux_armv7l.whl (1 MB) haproh-0.70-cp313-cp313-linux_armv7l.whl (1 MB) haproh-0.70-cp313-cp313-linux_armv6l.whl (1 MB)
0.66	2025-10-05
haproh-0.66-cp311-cp311-linux_armv6l.whl (1 MB) haproh-0.66-cp311-cp311-linux_armv7l.whl (1 MB) haproh-0.66-cp313-cp313-linux_armv6l.whl (1 MB) haproh-0.66-cp313-cp313-linux_armv7l.whl (1 MB) haproh-0.66-cp39-cp39-linux_armv6l.whl (1 MB) haproh-0.66-cp39-cp39-linux_armv7l.whl (1 MB)
0.64	2023-04-14
hapROH-0.64-cp37-cp37m-linux_armv6l.whl (313 KB) hapROH-0.64-cp37-cp37m-linux_armv7l.whl (313 KB) hapROH-0.64-cp39-cp39-linux_armv6l.whl (722 KB) hapROH-0.64-cp39-cp39-linux_armv7l.whl (722 KB) hapROH-0.64-cp311-cp311-linux_armv6l.whl (781 KB) hapROH-0.64-cp311-cp311-linux_armv7l.whl (781 KB) haproh-0.64-cp313-cp313-linux_armv6l.whl (871 KB) haproh-0.64-cp313-cp313-linux_armv7l.whl (871 KB)
0.63	2023-01-26
hapROH-0.63-cp37-cp37m-linux_armv6l.whl (313 KB) hapROH-0.63-cp37-cp37m-linux_armv7l.whl (313 KB) hapROH-0.63-cp39-cp39-linux_armv6l.whl (722 KB) hapROH-0.63-cp39-cp39-linux_armv7l.whl (722 KB) hapROH-0.63-cp311-cp311-linux_armv6l.whl (781 KB) hapROH-0.63-cp311-cp311-linux_armv7l.whl (781 KB) haproh-0.63-cp313-cp313-linux_armv6l.whl (871 KB) haproh-0.63-cp313-cp313-linux_armv7l.whl (871 KB)
0.62	2022-11-19
hapROH-0.62-cp37-cp37m-linux_armv6l.whl (312 KB) hapROH-0.62-cp37-cp37m-linux_armv7l.whl (312 KB) hapROH-0.62-cp39-cp39-linux_armv6l.whl (726 KB) hapROH-0.62-cp39-cp39-linux_armv7l.whl (726 KB) hapROH-0.62-cp311-cp311-linux_armv6l.whl (782 KB) hapROH-0.62-cp311-cp311-linux_armv7l.whl (782 KB) haproh-0.62-cp313-cp313-linux_armv6l.whl (869 KB) haproh-0.62-cp313-cp313-linux_armv7l.whl (869 KB)
0.61	2022-11-18
hapROH-0.61-cp37-cp37m-linux_armv6l.whl (312 KB) hapROH-0.61-cp37-cp37m-linux_armv7l.whl (312 KB) hapROH-0.61-cp39-cp39-linux_armv6l.whl (726 KB) hapROH-0.61-cp39-cp39-linux_armv7l.whl (726 KB) hapROH-0.61-cp311-cp311-linux_armv6l.whl (782 KB) hapROH-0.61-cp311-cp311-linux_armv7l.whl (782 KB) haproh-0.61-cp313-cp313-linux_armv6l.whl (869 KB) haproh-0.61-cp313-cp313-linux_armv7l.whl (869 KB)
0.60	2022-08-30
hapROH-0.60-cp311-cp311-linux_armv6l.whl (782 KB) hapROH-0.60-cp311-cp311-linux_armv7l.whl (782 KB) hapROH-0.60-cp39-cp39-linux_armv6l.whl (723 KB) hapROH-0.60-cp39-cp39-linux_armv7l.whl (723 KB) hapROH-0.60-cp37-cp37m-linux_armv6l.whl (312 KB) hapROH-0.60-cp37-cp37m-linux_armv7l.whl (312 KB) haproh-0.60-cp313-cp313-linux_armv6l.whl (869 KB) haproh-0.60-cp313-cp313-linux_armv7l.whl (869 KB)
0.53	2022-07-01
hapROH-0.53-cp311-cp311-linux_armv6l.whl (778 KB) hapROH-0.53-cp311-cp311-linux_armv7l.whl (778 KB) hapROH-0.53-cp37-cp37m-linux_armv6l.whl (308 KB) hapROH-0.53-cp37-cp37m-linux_armv7l.whl (308 KB) hapROH-0.53-cp39-cp39-linux_armv6l.whl (720 KB) hapROH-0.53-cp39-cp39-linux_armv7l.whl (720 KB) haproh-0.53-cp313-cp313-linux_armv6l.whl (866 KB) haproh-0.53-cp313-cp313-linux_armv7l.whl (866 KB)
0.52	2022-06-29
hapROH-0.52-cp311-cp311-linux_armv6l.whl (777 KB) hapROH-0.52-cp311-cp311-linux_armv7l.whl (777 KB) hapROH-0.52-cp37-cp37m-linux_armv6l.whl (307 KB) hapROH-0.52-cp37-cp37m-linux_armv7l.whl (307 KB) hapROH-0.52-cp39-cp39-linux_armv6l.whl (718 KB) hapROH-0.52-cp39-cp39-linux_armv7l.whl (718 KB) haproh-0.52-cp313-cp313-linux_armv6l.whl (864 KB) haproh-0.52-cp313-cp313-linux_armv7l.whl (864 KB)
0.51a0 pre-release	2022-06-08
hapROH-0.51a0-cp311-cp311-linux_armv6l.whl (754 KB) hapROH-0.51a0-cp311-cp311-linux_armv7l.whl (754 KB) hapROH-0.51a0-cp37-cp37m-linux_armv6l.whl (284 KB) hapROH-0.51a0-cp37-cp37m-linux_armv7l.whl (284 KB) hapROH-0.51a0-cp39-cp39-linux_armv6l.whl (696 KB) hapROH-0.51a0-cp39-cp39-linux_armv7l.whl (696 KB) haproh-0.51a0-cp313-cp313-linux_armv6l.whl (842 KB) haproh-0.51a0-cp313-cp313-linux_armv7l.whl (842 KB)
0.5a0 pre-release	2022-03-14
hapROH-0.5a0-cp37-cp37m-linux_armv6l.whl (284 KB) hapROH-0.5a0-cp37-cp37m-linux_armv7l.whl (284 KB) hapROH-0.5a0-cp39-cp39-linux_armv6l.whl (696 KB) hapROH-0.5a0-cp39-cp39-linux_armv7l.whl (696 KB) hapROH-0.5a0-cp311-cp311-linux_armv6l.whl (754 KB) hapROH-0.5a0-cp311-cp311-linux_armv7l.whl (754 KB) haproh-0.5a0-cp313-cp313-linux_armv6l.whl (842 KB) haproh-0.5a0-cp313-cp313-linux_armv7l.whl (842 KB)
0.4a1 pre-release	2021-12-16
hapROH-0.4a1-cp37-cp37m-linux_armv6l.whl (281 KB) hapROH-0.4a1-cp37-cp37m-linux_armv7l.whl (281 KB) hapROH-0.4a1-cp39-cp39-linux_armv6l.whl (692 KB) hapROH-0.4a1-cp39-cp39-linux_armv7l.whl (692 KB) haproh-0.4a1-cp313-cp313-linux_armv6l.whl (838 KB) haproh-0.4a1-cp313-cp313-linux_armv7l.whl (838 KB)
0.3a4 pre-release	2021-06-14
hapROH-0.3a4-cp311-cp311-linux_armv6l.whl (712 KB) hapROH-0.3a4-cp311-cp311-linux_armv7l.whl (712 KB) hapROH-0.3a4-cp37-cp37m-linux_armv6l.whl (609 KB) hapROH-0.3a4-cp37-cp37m-linux_armv7l.whl (609 KB) hapROH-0.3a4-cp39-cp39-linux_armv6l.whl (652 KB) hapROH-0.3a4-cp39-cp39-linux_armv7l.whl (652 KB) haproh-0.3a4-cp313-cp313-linux_armv6l.whl (791 KB) haproh-0.3a4-cp313-cp313-linux_armv7l.whl (791 KB)
0.3a3 pre-release	2021-04-26
hapROH-0.3a3-cp311-cp311-linux_armv6l.whl (712 KB) hapROH-0.3a3-cp311-cp311-linux_armv7l.whl (712 KB) hapROH-0.3a3-cp37-cp37m-linux_armv6l.whl (608 KB) hapROH-0.3a3-cp37-cp37m-linux_armv7l.whl (608 KB) hapROH-0.3a3-cp39-cp39-linux_armv6l.whl (652 KB) hapROH-0.3a3-cp39-cp39-linux_armv7l.whl (652 KB) haproh-0.3a3-cp313-cp313-linux_armv6l.whl (791 KB) haproh-0.3a3-cp313-cp313-linux_armv7l.whl (791 KB)
0.3a2 pre-release	2021-03-19
hapROH-0.3a2-cp37-cp37m-linux_armv6l.whl (607 KB) hapROH-0.3a2-cp37-cp37m-linux_armv7l.whl (607 KB) hapROH-0.3a2-cp311-cp311-linux_armv6l.whl (711 KB) hapROH-0.3a2-cp311-cp311-linux_armv7l.whl (711 KB) hapROH-0.3a2-cp39-cp39-linux_armv6l.whl (651 KB) hapROH-0.3a2-cp39-cp39-linux_armv7l.whl (651 KB) haproh-0.3a2-cp313-cp313-linux_armv6l.whl (789 KB) haproh-0.3a2-cp313-cp313-linux_armv7l.whl (789 KB)
0.3a1 pre-release	2020-12-14
hapROH-0.3a1-cp37-cp37m-linux_armv6l.whl (607 KB) hapROH-0.3a1-cp37-cp37m-linux_armv7l.whl (607 KB) hapROH-0.3a1-cp311-cp311-linux_armv6l.whl (710 KB) hapROH-0.3a1-cp311-cp311-linux_armv7l.whl (710 KB) hapROH-0.3a1-cp39-cp39-linux_armv6l.whl (650 KB) hapROH-0.3a1-cp39-cp39-linux_armv7l.whl (650 KB) haproh-0.3a1-cp313-cp313-linux_armv6l.whl (789 KB) haproh-0.3a1-cp313-cp313-linux_armv7l.whl (789 KB)
0.2a3 pre-release	2020-11-20
hapROH-0.2a3-cp37-cp37m-linux_armv6l.whl (511 KB) hapROH-0.2a3-cp37-cp37m-linux_armv7l.whl (511 KB) hapROH-0.2a3-cp311-cp311-linux_armv6l.whl (614 KB) hapROH-0.2a3-cp311-cp311-linux_armv7l.whl (614 KB) hapROH-0.2a3-cp39-cp39-linux_armv6l.whl (558 KB) hapROH-0.2a3-cp39-cp39-linux_armv7l.whl (558 KB) haproh-0.2a3-cp313-cp313-linux_armv6l.whl (673 KB) haproh-0.2a3-cp313-cp313-linux_armv7l.whl (673 KB)
0.2a2 pre-release	2020-11-19
hapROH-0.2a2-cp37-cp37m-linux_armv6l.whl (511 KB) hapROH-0.2a2-cp37-cp37m-linux_armv7l.whl (511 KB) hapROH-0.2a2-cp311-cp311-linux_armv6l.whl (613 KB) hapROH-0.2a2-cp311-cp311-linux_armv7l.whl (613 KB) hapROH-0.2a2-cp39-cp39-linux_armv6l.whl (558 KB) hapROH-0.2a2-cp39-cp39-linux_armv7l.whl (558 KB) haproh-0.2a2-cp313-cp313-linux_armv6l.whl (673 KB) haproh-0.2a2-cp313-cp313-linux_armv7l.whl (673 KB)
0.2a1 pre-release	2020-10-20
hapROH-0.2a1-cp37-cp37m-linux_armv6l.whl (507 KB) hapROH-0.2a1-cp37-cp37m-linux_armv7l.whl (507 KB) hapROH-0.2a1-cp311-cp311-linux_armv6l.whl (610 KB) hapROH-0.2a1-cp311-cp311-linux_armv7l.whl (610 KB) hapROH-0.2a1-cp39-cp39-linux_armv6l.whl (554 KB) hapROH-0.2a1-cp39-cp39-linux_armv7l.whl (554 KB) haproh-0.2a1-cp313-cp313-linux_armv6l.whl (669 KB) haproh-0.2a1-cp313-cp313-linux_armv7l.whl (669 KB)
0.1a9 pre-release	2020-10-05
hapROH-0.1a9-cp37-cp37m-linux_armv6l.whl (507 KB) hapROH-0.1a9-cp37-cp37m-linux_armv7l.whl (507 KB) hapROH-0.1a9-cp311-cp311-linux_armv6l.whl (609 KB) hapROH-0.1a9-cp311-cp311-linux_armv7l.whl (609 KB) hapROH-0.1a9-cp39-cp39-linux_armv6l.whl (554 KB) hapROH-0.1a9-cp39-cp39-linux_armv7l.whl (554 KB) haproh-0.1a9-cp313-cp313-linux_armv6l.whl (669 KB) haproh-0.1a9-cp313-cp313-linux_armv7l.whl (669 KB)
0.1a8 pre-release	2020-09-10
hapROH-0.1a8-cp37-cp37m-linux_armv6l.whl (528 KB) hapROH-0.1a8-cp37-cp37m-linux_armv7l.whl (528 KB) hapROH-0.1a8-cp311-cp311-linux_armv6l.whl (631 KB) hapROH-0.1a8-cp311-cp311-linux_armv7l.whl (631 KB) hapROH-0.1a8-cp39-cp39-linux_armv6l.whl (575 KB) hapROH-0.1a8-cp39-cp39-linux_armv7l.whl (575 KB) haproh-0.1a8-cp313-cp313-linux_armv6l.whl (690 KB) haproh-0.1a8-cp313-cp313-linux_armv7l.whl (690 KB)
0.1a7 pre-release	2020-08-24
hapROH-0.1a7-cp37-cp37m-linux_armv6l.whl (527 KB) hapROH-0.1a7-cp37-cp37m-linux_armv7l.whl (527 KB) hapROH-0.1a7-cp311-cp311-linux_armv6l.whl (630 KB) hapROH-0.1a7-cp311-cp311-linux_armv7l.whl (630 KB) hapROH-0.1a7-cp39-cp39-linux_armv6l.whl (574 KB) hapROH-0.1a7-cp39-cp39-linux_armv7l.whl (574 KB) haproh-0.1a7-cp313-cp313-linux_armv6l.whl (689 KB) haproh-0.1a7-cp313-cp313-linux_armv7l.whl (689 KB)
0.1a6 pre-release	2020-07-23
hapROH-0.1a6-cp37-cp37m-linux_armv6l.whl (530 KB) hapROH-0.1a6-cp37-cp37m-linux_armv7l.whl (530 KB) hapROH-0.1a6-cp39-cp39-linux_armv6l.whl (573 KB) hapROH-0.1a6-cp39-cp39-linux_armv7l.whl (573 KB) hapROH-0.1a6-cp311-cp311-linux_armv6l.whl (629 KB) hapROH-0.1a6-cp311-cp311-linux_armv7l.whl (629 KB) haproh-0.1a6-cp313-cp313-linux_armv6l.whl (688 KB) haproh-0.1a6-cp313-cp313-linux_armv7l.whl (688 KB)
0.1a5 pre-release	2020-07-22
hapROH-0.1a5-cp37-cp37m-linux_armv6l.whl (529 KB) hapROH-0.1a5-cp37-cp37m-linux_armv7l.whl (529 KB) hapROH-0.1a5-cp39-cp39-linux_armv6l.whl (573 KB) hapROH-0.1a5-cp39-cp39-linux_armv7l.whl (573 KB) hapROH-0.1a5-cp311-cp311-linux_armv6l.whl (629 KB) hapROH-0.1a5-cp311-cp311-linux_armv7l.whl (629 KB) haproh-0.1a5-cp313-cp313-linux_armv6l.whl (688 KB) haproh-0.1a5-cp313-cp313-linux_armv7l.whl (688 KB)
0.1a4 pre-release	2020-06-28
hapROH-0.1a4-cp37-cp37m-linux_armv6l.whl (526 KB) hapROH-0.1a4-cp37-cp37m-linux_armv7l.whl (526 KB) hapROH-0.1a4-cp39-cp39-linux_armv6l.whl (570 KB) hapROH-0.1a4-cp39-cp39-linux_armv7l.whl (570 KB) hapROH-0.1a4-cp311-cp311-linux_armv6l.whl (625 KB) hapROH-0.1a4-cp311-cp311-linux_armv7l.whl (625 KB) haproh-0.1a4-cp313-cp313-linux_armv6l.whl (685 KB) haproh-0.1a4-cp313-cp313-linux_armv7l.whl (685 KB)
0.1a3 pre-release	2020-06-28
hapROH-0.1a3-cp37-cp37m-linux_armv6l.whl (526 KB) hapROH-0.1a3-cp37-cp37m-linux_armv7l.whl (526 KB) hapROH-0.1a3-cp39-cp39-linux_armv6l.whl (570 KB) hapROH-0.1a3-cp39-cp39-linux_armv7l.whl (570 KB) hapROH-0.1a3-cp311-cp311-linux_armv7l.whl (625 KB) hapROH-0.1a3-cp311-cp311-linux_armv6l.whl (625 KB) haproh-0.1a3-cp313-cp313-linux_armv6l.whl (685 KB) haproh-0.1a3-cp313-cp313-linux_armv7l.whl (685 KB)
0.1a2 pre-release	2020-06-01
hapROH-0.1a2-cp37-cp37m-linux_armv7l.whl (540 KB) hapROH-0.1a2-cp37-cp37m-linux_armv6l.whl (540 KB) hapROH-0.1a2-cp39-cp39-linux_armv6l.whl (569 KB) hapROH-0.1a2-cp39-cp39-linux_armv7l.whl (569 KB) hapROH-0.1a2-cp311-cp311-linux_armv6l.whl (625 KB) hapROH-0.1a2-cp311-cp311-linux_armv7l.whl (625 KB) haproh-0.1a2-cp313-cp313-linux_armv6l.whl (685 KB) haproh-0.1a2-cp313-cp313-linux_armv7l.whl (685 KB)
0.1a1 pre-release	2020-05-31
hapROH-0.1a1-cp37-cp37m-linux_armv7l.whl (539 KB) hapROH-0.1a1-cp37-cp37m-linux_armv6l.whl (539 KB) hapROH-0.1a1-cp39-cp39-linux_armv6l.whl (569 KB) hapROH-0.1a1-cp39-cp39-linux_armv7l.whl (569 KB) hapROH-0.1a1-cp311-cp311-linux_armv6l.whl (624 KB) hapROH-0.1a1-cp311-cp311-linux_armv7l.whl (624 KB) haproh-0.1a1-cp313-cp313-linux_armv6l.whl (684 KB) haproh-0.1a1-cp313-cp313-linux_armv7l.whl (684 KB)

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