hapROH

Identify runs of homozygosity (hapROH) and contamination (hapCon) in low coverage ancient human DNA data (1240K SNPs) using modern reference panel

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install haproh

Releases

Version Released Buster
Python 3.7
Bullseye
Python 3.9
Bookworm
Python 3.11
Files
0.64 2023-04-14      
0.63 2023-01-26      
0.62 2022-11-19      
0.61 2022-11-18      
0.60 2022-08-30      
0.53 2022-07-01      
0.52 2022-06-29      
0.51a0 pre-release 2022-06-08      
0.5a0 pre-release 2022-03-14      
0.4a1 pre-release 2021-12-16      
0.3a4 pre-release 2021-06-14      
0.3a3 pre-release 2021-04-26      
0.3a2 pre-release 2021-03-19      
0.3a1 pre-release 2020-12-14      
0.2a3 pre-release 2020-11-20      
0.2a2 pre-release 2020-11-19      
0.2a1 pre-release 2020-10-20      
0.1a9 pre-release 2020-10-05      
0.1a8 pre-release 2020-09-10      
0.1a7 pre-release 2020-08-24      
0.1a6 pre-release 2020-07-23      
0.1a5 pre-release 2020-07-22      
0.1a4 pre-release 2020-06-28      
0.1a3 pre-release 2020-06-28      
0.1a2 pre-release 2020-06-01      
0.1a1 pre-release 2020-05-31      

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Page last updated 2023-10-28 01:44:06 UTC