piwheels

phased-methylation

Pipeline for phased methylation calling on raw nanopore data

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install phased-methylation

Dependencies

• tabulate
• nvsmi
• psutil
• gputil
• cython
• tempfifo
• pysam
• pandas
• megalodon
• pybedtools
• pyfaidx

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
0.17.7	2023-03-05
phased_methylation-0.17.7-py3-none-any.whl (18 MB)
0.17.6	2023-03-05
phased_methylation-0.17.6-py3-none-any.whl (18 MB)
0.17.5	2022-05-22
phased_methylation-0.17.5-py3-none-any.whl (18 MB)
0.17.4	2022-04-27
phased_methylation-0.17.4-py3-none-any.whl (18 MB)
0.17.3	2022-04-27
phased_methylation-0.17.3-py3-none-any.whl (18 MB)

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