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sonnia

SoNNia is a Python 3 software developed to infer selection pressures on features of amino acid CDR3 sequences. SoNNia takes as input TCR CDR3 amino acid sequences with V and J genes. Its output is s…

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install sonnia

Dependencies

• typer
• keras
• torch
• tqdm
• matplotlib
• polars
• numpy
• scipy
• pandas
• olga

Releases

Version	Released	Bookworm Python 3.11	Trixie Python 3.13	Files
0.4.0	2025-11-18
sonnia-0.4.0-py3-none-any.whl (2 MB)
0.3.1	2024-08-16
sonnia-0.3.1-py3-none-any.whl (2 MB)
0.3.0	2024-07-31
sonnia-0.3.0-py3-none-any.whl (2 MB)
0.2.5	2024-07-26
sonnia-0.2.5-py3-none-any.whl (2 MB)
0.2.4	2024-07-11
sonnia-0.2.4-py3-none-any.whl (2 MB)
0.2.3	2024-04-16
sonnia-0.2.3-py3-none-any.whl (1 MB)
0.2.2	2024-04-15
sonnia-0.2.2-py3-none-any.whl (1 MB)
0.2.1	2024-04-15
sonnia-0.2.1-py3-none-any.whl (82 KB)
0.2.0	2024-04-04
sonnia-0.2.0-py3-none-any.whl (82 KB)
0.1.5	2022-05-24
sonnia-0.1.5-py3-none-any.whl (63 KB)
0.1.4	2022-03-25
sonnia-0.1.4-py3-none-any.whl (63 KB)
0.1.3	2022-03-15
sonnia-0.1.3-py3-none-any.whl (63 KB)
0.1.2	2022-03-08
sonnia-0.1.2-py3-none-any.whl (63 KB)
0.1.1	2022-03-08
sonnia-0.1.1-py3-none-any.whl (63 KB)
0.1.0	2022-03-08
sonnia-0.1.0-py3-none-any.whl (63 KB)
0.0.9	2021-12-23
sonnia-0.0.9-py3-none-any.whl (63 KB)
0.0.8	2021-07-06
sonnia-0.0.8-py3-none-any.whl (74 KB)
0.0.7	2021-03-15
sonnia-0.0.7-py3-none-any.whl (74 KB)
0.0.6	2021-03-15
sonnia-0.0.6-py3-none-any.whl (74 KB)
0.0.5	2021-01-30
sonnia-0.0.5-py3-none-any.whl (73 KB)
0.0.4	2021-01-21
sonnia-0.0.4-py3-none-any.whl (73 KB)
0.0.3	2021-01-05
sonnia-0.0.3-py3-none-any.whl (73 KB)
0.0.2	2021-01-05
sonnia-0.0.2-py3-none-any.whl (73 KB)
0.0.1	2020-12-14
sonnia-0.0.1-py3-none-any.whl (70 KB)

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