piwheels

velocyto

RNA velocity analysis for single cell RNA-seq data

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install velocyto

Dependencies

• numba
• cython
• click
• matplotlib
• loompy
• numpy
• pysam
• h5py
• scipy
• scikit-learn
• pandas

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
0.17.17	2019-01-31
velocyto-0.17.17-cp39-cp39-linux_armv6l.whl (423 KB) velocyto-0.17.17-cp39-cp39-linux_armv7l.whl (423 KB) velocyto-0.17.17-cp37-cp37m-linux_armv6l.whl (399 KB) velocyto-0.17.17-cp37-cp37m-linux_armv7l.whl (399 KB) velocyto-0.17.17-cp313-cp313-linux_armv6l.whl (505 KB) velocyto-0.17.17-cp313-cp313-linux_armv7l.whl (505 KB)
0.17.16	2019-01-16
velocyto-0.17.16-cp39-cp39-linux_armv6l.whl (423 KB) velocyto-0.17.16-cp39-cp39-linux_armv7l.whl (423 KB) velocyto-0.17.16-cp37-cp37m-linux_armv7l.whl (399 KB) velocyto-0.17.16-cp37-cp37m-linux_armv6l.whl (399 KB) velocyto-0.17.16-cp313-cp313-linux_armv6l.whl (505 KB) velocyto-0.17.16-cp313-cp313-linux_armv7l.whl (505 KB)
0.17.15	2019-01-16
velocyto-0.17.15-cp39-cp39-linux_armv6l.whl (423 KB) velocyto-0.17.15-cp39-cp39-linux_armv7l.whl (423 KB) velocyto-0.17.15-cp37-cp37m-linux_armv7l.whl (399 KB) velocyto-0.17.15-cp37-cp37m-linux_armv6l.whl (399 KB) velocyto-0.17.15-cp313-cp313-linux_armv6l.whl (505 KB) velocyto-0.17.15-cp313-cp313-linux_armv7l.whl (505 KB)
0.17.14	2018-12-20
velocyto-0.17.14-cp39-cp39-linux_armv6l.whl (423 KB) velocyto-0.17.14-cp39-cp39-linux_armv7l.whl (423 KB) velocyto-0.17.14-cp37-cp37m-linux_armv6l.whl (399 KB) velocyto-0.17.14-cp37-cp37m-linux_armv7l.whl (399 KB) velocyto-0.17.14-cp313-cp313-linux_armv6l.whl (504 KB) velocyto-0.17.14-cp313-cp313-linux_armv7l.whl (504 KB)
0.17.13	2018-09-20
velocyto-0.17.13-cp39-cp39-linux_armv6l.whl (423 KB) velocyto-0.17.13-cp39-cp39-linux_armv7l.whl (423 KB) velocyto-0.17.13-cp37-cp37m-linux_armv7l.whl (399 KB) velocyto-0.17.13-cp37-cp37m-linux_armv6l.whl (399 KB) velocyto-0.17.13-cp313-cp313-linux_armv6l.whl (504 KB) velocyto-0.17.13-cp313-cp313-linux_armv7l.whl (504 KB)
0.17.11	2018-08-22
velocyto-0.17.11-cp39-cp39-linux_armv6l.whl (422 KB) velocyto-0.17.11-cp39-cp39-linux_armv7l.whl (422 KB) velocyto-0.17.11-cp37-cp37m-linux_armv7l.whl (398 KB) velocyto-0.17.11-cp37-cp37m-linux_armv6l.whl (398 KB) velocyto-0.17.11-cp313-cp313-linux_armv6l.whl (504 KB) velocyto-0.17.11-cp313-cp313-linux_armv7l.whl (504 KB)
0.17.10	2018-07-26
velocyto-0.17.10-cp39-cp39-linux_armv6l.whl (422 KB) velocyto-0.17.10-cp39-cp39-linux_armv7l.whl (422 KB) velocyto-0.17.10-cp37-cp37m-linux_armv7l.whl (398 KB) velocyto-0.17.10-cp37-cp37m-linux_armv6l.whl (398 KB) velocyto-0.17.10-cp313-cp313-linux_armv6l.whl (504 KB) velocyto-0.17.10-cp313-cp313-linux_armv7l.whl (504 KB)
0.17.8	2018-05-30
velocyto-0.17.8-cp37-cp37m-linux_armv6l.whl (398 KB) velocyto-0.17.8-cp37-cp37m-linux_armv7l.whl (398 KB) velocyto-0.17.8-cp39-cp39-linux_armv6l.whl (422 KB) velocyto-0.17.8-cp39-cp39-linux_armv7l.whl (422 KB) velocyto-0.17.8-cp313-cp313-linux_armv6l.whl (504 KB) velocyto-0.17.8-cp313-cp313-linux_armv7l.whl (504 KB)
0.17.7	2018-05-14
velocyto-0.17.7-cp37-cp37m-linux_armv6l.whl (398 KB) velocyto-0.17.7-cp37-cp37m-linux_armv7l.whl (398 KB) velocyto-0.17.7-cp39-cp39-linux_armv6l.whl (422 KB) velocyto-0.17.7-cp39-cp39-linux_armv7l.whl (422 KB) velocyto-0.17.7-cp313-cp313-linux_armv6l.whl (503 KB) velocyto-0.17.7-cp313-cp313-linux_armv7l.whl (503 KB)
0.17.6	2018-05-03
velocyto-0.17.6-cp37-cp37m-linux_armv6l.whl (398 KB) velocyto-0.17.6-cp37-cp37m-linux_armv7l.whl (398 KB) velocyto-0.17.6-cp39-cp39-linux_armv6l.whl (422 KB) velocyto-0.17.6-cp39-cp39-linux_armv7l.whl (422 KB) velocyto-0.17.6-cp313-cp313-linux_armv6l.whl (503 KB) velocyto-0.17.6-cp313-cp313-linux_armv7l.whl (503 KB)
0.17.4	2018-04-19
velocyto-0.17.4-cp37-cp37m-linux_armv7l.whl (397 KB) velocyto-0.17.4-cp37-cp37m-linux_armv6l.whl (397 KB) velocyto-0.17.4-cp39-cp39-linux_armv6l.whl (421 KB) velocyto-0.17.4-cp39-cp39-linux_armv7l.whl (421 KB) velocyto-0.17.4-cp313-cp313-linux_armv6l.whl (503 KB) velocyto-0.17.4-cp313-cp313-linux_armv7l.whl (503 KB)
0.17.3	2018-04-19
velocyto-0.17.3-cp37-cp37m-linux_armv7l.whl (397 KB) velocyto-0.17.3-cp37-cp37m-linux_armv6l.whl (397 KB) velocyto-0.17.3-cp39-cp39-linux_armv6l.whl (421 KB) velocyto-0.17.3-cp39-cp39-linux_armv7l.whl (421 KB) velocyto-0.17.3-cp313-cp313-linux_armv6l.whl (503 KB) velocyto-0.17.3-cp313-cp313-linux_armv7l.whl (503 KB)
0.17.2	2018-04-18
velocyto-0.17.2-cp37-cp37m-linux_armv6l.whl (397 KB) velocyto-0.17.2-cp37-cp37m-linux_armv7l.whl (397 KB) velocyto-0.17.2-cp39-cp39-linux_armv6l.whl (421 KB) velocyto-0.17.2-cp39-cp39-linux_armv7l.whl (421 KB) velocyto-0.17.2-cp313-cp313-linux_armv6l.whl (503 KB) velocyto-0.17.2-cp313-cp313-linux_armv7l.whl (503 KB)
0.17.1	2018-04-18
velocyto-0.17.1-cp37-cp37m-linux_armv6l.whl (397 KB) velocyto-0.17.1-cp37-cp37m-linux_armv7l.whl (397 KB) velocyto-0.17.1-cp39-cp39-linux_armv6l.whl (421 KB) velocyto-0.17.1-cp39-cp39-linux_armv7l.whl (421 KB) velocyto-0.17.1-cp313-cp313-linux_armv6l.whl (502 KB) velocyto-0.17.1-cp313-cp313-linux_armv7l.whl (502 KB)
0.13.8	2018-02-07
velocyto-0.13.8-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.13.8-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.13.8-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.13.8-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.13.8-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.13.8-cp313-cp313-linux_armv7l.whl (485 KB)
0.13.7	2018-02-07
velocyto-0.13.7-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.13.7-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.13.7-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.13.7-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.13.7-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.13.7-cp313-cp313-linux_armv7l.whl (485 KB)
0.13.4	2018-01-25
velocyto-0.13.4-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.13.4-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.13.4-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.13.4-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.13.4-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.13.4-cp313-cp313-linux_armv7l.whl (485 KB)
0.13.3	2018-01-25
velocyto-0.13.3-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.13.3-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.13.3-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.13.3-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.13.3-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.13.3-cp313-cp313-linux_armv7l.whl (485 KB)
0.13.2	2018-01-24
velocyto-0.13.2-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.13.2-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.13.2-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.13.2-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.13.2-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.13.2-cp313-cp313-linux_armv7l.whl (485 KB)
0.13.1	2018-01-22
velocyto-0.13.1-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.13.1-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.13.1-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.13.1-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.13.1-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.13.1-cp313-cp313-linux_armv7l.whl (485 KB)
0.13.0	2018-01-19
velocyto-0.13.0-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.13.0-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.13.0-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.13.0-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.13.0-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.13.0-cp313-cp313-linux_armv7l.whl (485 KB)
0.12.4	2018-01-18
velocyto-0.12.4-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.12.4-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.12.4-cp39-cp39-linux_armv6l.whl (461 KB) velocyto-0.12.4-cp39-cp39-linux_armv7l.whl (461 KB) velocyto-0.12.4-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.12.4-cp313-cp313-linux_armv7l.whl (485 KB)
0.12.3	2018-01-17
velocyto-0.12.3-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.12.3-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.12.3-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.12.3-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.12.3-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.12.3-cp313-cp313-linux_armv7l.whl (485 KB)
0.12.2	2018-01-12
velocyto-0.12.2-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.12.2-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.12.2-cp39-cp39-linux_armv6l.whl (461 KB) velocyto-0.12.2-cp39-cp39-linux_armv7l.whl (461 KB) velocyto-0.12.2-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.12.2-cp313-cp313-linux_armv7l.whl (485 KB)
0.12.1	2018-01-04
velocyto-0.12.1-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.12.1-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.12.1-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.12.1-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.12.1-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.12.1-cp313-cp313-linux_armv7l.whl (485 KB)
0.12.0	2017-12-24
velocyto-0.12.0-cp37-cp37m-linux_armv7l.whl (380 KB) velocyto-0.12.0-cp37-cp37m-linux_armv6l.whl (380 KB) velocyto-0.12.0-cp39-cp39-linux_armv6l.whl (404 KB) velocyto-0.12.0-cp39-cp39-linux_armv7l.whl (404 KB) velocyto-0.12.0-cp313-cp313-linux_armv6l.whl (485 KB) velocyto-0.12.0-cp313-cp313-linux_armv7l.whl (485 KB)
0.11.0	2017-11-25
velocyto-0.11.0-cp37-cp37m-linux_armv6l.whl (376 KB) velocyto-0.11.0-cp37-cp37m-linux_armv7l.whl (376 KB) velocyto-0.11.0-cp39-cp39-linux_armv6l.whl (400 KB) velocyto-0.11.0-cp39-cp39-linux_armv7l.whl (400 KB) velocyto-0.11.0-cp313-cp313-linux_armv6l.whl (481 KB) velocyto-0.11.0-cp313-cp313-linux_armv7l.whl (481 KB)
0.10.3	2017-11-22
velocyto-0.10.3-cp37-cp37m-linux_armv7l.whl (376 KB) velocyto-0.10.3-cp37-cp37m-linux_armv6l.whl (376 KB) velocyto-0.10.3-cp39-cp39-linux_armv6l.whl (400 KB) velocyto-0.10.3-cp39-cp39-linux_armv7l.whl (400 KB) velocyto-0.10.3-cp313-cp313-linux_armv6l.whl (481 KB) velocyto-0.10.3-cp313-cp313-linux_armv7l.whl (481 KB)
0.10.2	2017-11-18
velocyto-0.10.2-cp37-cp37m-linux_armv6l.whl (376 KB) velocyto-0.10.2-cp37-cp37m-linux_armv7l.whl (376 KB) velocyto-0.10.2-cp39-cp39-linux_armv6l.whl (400 KB) velocyto-0.10.2-cp39-cp39-linux_armv7l.whl (400 KB) velocyto-0.10.2-cp313-cp313-linux_armv6l.whl (481 KB) velocyto-0.10.2-cp313-cp313-linux_armv7l.whl (481 KB)
0.10.1	2017-11-18
velocyto-0.10.1-cp37-cp37m-linux_armv6l.whl (376 KB) velocyto-0.10.1-cp37-cp37m-linux_armv7l.whl (376 KB) velocyto-0.10.1-cp39-cp39-linux_armv6l.whl (400 KB) velocyto-0.10.1-cp39-cp39-linux_armv7l.whl (400 KB) velocyto-0.10.1-cp313-cp313-linux_armv6l.whl (481 KB) velocyto-0.10.1-cp313-cp313-linux_armv7l.whl (481 KB)
0.9.13	2017-11-04
velocyto-0.9.13-cp37-cp37m-linux_armv6l.whl (491 KB) velocyto-0.9.13-cp37-cp37m-linux_armv7l.whl (491 KB) velocyto-0.9.13-cp39-cp39-linux_armv6l.whl (515 KB) velocyto-0.9.13-cp39-cp39-linux_armv7l.whl (515 KB) velocyto-0.9.13-cp313-cp313-linux_armv6l.whl (634 KB) velocyto-0.9.13-cp313-cp313-linux_armv7l.whl (634 KB)
0.9.11	2017-11-03
velocyto-0.9.11-cp37-cp37m-linux_armv6l.whl (490 KB) velocyto-0.9.11-cp37-cp37m-linux_armv7l.whl (490 KB) velocyto-0.9.11-cp39-cp39-linux_armv6l.whl (574 KB) velocyto-0.9.11-cp39-cp39-linux_armv7l.whl (574 KB) velocyto-0.9.11-cp313-cp313-linux_armv6l.whl (634 KB) velocyto-0.9.11-cp313-cp313-linux_armv7l.whl (634 KB)
0.9.10	2017-11-01
velocyto-0.9.10-cp37-cp37m-linux_armv7l.whl (490 KB) velocyto-0.9.10-cp37-cp37m-linux_armv6l.whl (490 KB) velocyto-0.9.10-cp39-cp39-linux_armv6l.whl (514 KB) velocyto-0.9.10-cp39-cp39-linux_armv7l.whl (514 KB) velocyto-0.9.10-cp313-cp313-linux_armv6l.whl (633 KB) velocyto-0.9.10-cp313-cp313-linux_armv7l.whl (633 KB)
0.9.9	2017-10-31
velocyto-0.9.9-cp37-cp37m-linux_armv7l.whl (490 KB) velocyto-0.9.9-cp37-cp37m-linux_armv6l.whl (490 KB) velocyto-0.9.9-cp39-cp39-linux_armv6l.whl (514 KB) velocyto-0.9.9-cp39-cp39-linux_armv7l.whl (514 KB) velocyto-0.9.9-cp313-cp313-linux_armv6l.whl (633 KB) velocyto-0.9.9-cp313-cp313-linux_armv7l.whl (633 KB)
0.9.8	2017-10-25
velocyto-0.9.8-cp37-cp37m-linux_armv7l.whl (490 KB) velocyto-0.9.8-cp37-cp37m-linux_armv6l.whl (490 KB) velocyto-0.9.8-cp39-cp39-linux_armv6l.whl (514 KB) velocyto-0.9.8-cp39-cp39-linux_armv7l.whl (514 KB) velocyto-0.9.8-cp313-cp313-linux_armv6l.whl (633 KB) velocyto-0.9.8-cp313-cp313-linux_armv7l.whl (633 KB)
0.9.7	2017-10-25

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