STCAT
An automated T cell type annotation tool for scRNA-seq datasets.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install stcat
Dependencies
- natsort
- patsy
- pynndescent
- contourpy
- tqdm
- tzdata
- matplotlib
- scanpy
- scipy
- umap-learn
- openpyxl
- pytz
- zipp
- click
- networkx
- pillow
- cycler
- array-api-compat
- importlib-resources
- llvmlite
- exceptiongroup
- python-dateutil
- session-info
- threadpoolctl
- stdlib-list
- numpy
- joblib
- packaging
- numba
- leidenalg
- statsmodels
- fonttools
- igraph
- texttable
- six
- seaborn
- scikit-learn
- anndata
- h5py
- pandas
- et-xmlfile
- kiwisolver
- pyparsing
Releases
| Version | Released | Bookworm Python 3.11 |
Trixie Python 3.13 |
Files |
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| 1.1.2 | 2026-07-31 | |||
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| 1.1.1 | 2026-07-29 | |||
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| 1.0.8 | 2025-04-25 | |||
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| 1.0.7 | 2025-01-08 | |||
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| 1.0.6 | 2025-01-08 | |||
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| 1.0.5 | 2025-01-07 | |||
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| 1.0.4 | 2025-01-07 | |||
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| 1.0.3 | 2025-01-07 | |||
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| 1.0.2 | 2024-09-07 | |||
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| 1.0.1 | 2024-08-27 | |||
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| 1.0.0 | 2024-08-27 | |||
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| 0.7 | 2024-08-26 | |||
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| 0.6.1 | 2024-05-11 | |||
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| 0.6 | 2024-05-10 | |||
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| 0.5 | 2024-05-06 | |||
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| 0.4 | 2024-05-06 | |||
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| 0.3.1 | 2024-04-09 | |||
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| 0.3 | 2024-04-09 | |||
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| 0.2 | 2024-02-27 | |||
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