stereopy
Spatial transcriptomic analysis in python.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install stereopy
Dependencies
- tensorflow
- natsort
- spatialpandas
- patsy
- typing-extensions
- tqdm
- matplotlib
- scipy
- umap-learn
- phenograph
- jinja2
- param
- gefpy
- harmonypy
- kdepy
- gtfparse
- arboreto
- colorcet
- pillow
- holoviews
- squidpy
- albumentations
- torchvision
- bokeh
- xarray
- dask
- urllib3
- imageio
- distributed
- torch
- numpy
- joblib
- louvain
- slideio
- datashader
- packaging
- requests
- numba
- leidenalg
- statsmodels
- glog
- igraph
- opencv-python
- panel
- keras
- protobuf
- loompy
- seaborn
- scikit-learn
- anndata
- hotspotsc
- h5py
- pandas
- setuptools
- tensorflow-io-gcs-filesystem
- tifffile
- tables
- scikit-image
- shapely
- hvplot
- pyarrow
Releases
| Version | Released | Bookworm Python 3.11 |
Trixie Python 3.13 |
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| 1.6.2 | 2025-11-27 | |||
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| 1.6.1 | 2025-06-16 | |||
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| 1.6.0 | 2025-02-24 | |||
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| 1.5.1 | 2024-12-26 | |||
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| 1.5.0 | 2024-11-08 | |||
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| 1.4.0 | 2024-09-05 | |||
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| 1.3.1 | 2024-06-28 | |||
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| 1.3.0 | 2024-05-31 | |||
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| 1.2.0 | 2024-03-29 | |||
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| 1.1.0 | 2024-01-17 | |||
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| 1.0.0 | 2023-12-04 | |||
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| 0.14.0b1 pre-release | 2023-09-15 | |||
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| 0.13.0b1 pre-release | 2023-07-11 | |||
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| 0.12.1 | 2023-06-21 | |||
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| 0.12.0 | 2023-04-28 | |||
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| 0.11.0 | 2023-04-04 | |||
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| 0.10.0 | 2023-02-22 | |||
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| 0.9.0 | 2023-01-10 | |||
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| 0.8.0 | 2022-12-02 | |||
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| 0.7.0 | 2022-11-17 | |||
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| 0.6.0 | 2022-09-30 | |||
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| 0.5.1 | 2022-09-04 | |||
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| 0.5.0 | 2022-09-02 | |||
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| 0.4.0 | 2022-07-31 | |||
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| 0.3.1 | 2022-06-30 | |||
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| 0.3.0 | 2022-06-10 | |||
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| 0.2.4 | 2022-01-19 | |||
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| 0.2.3 | 2022-01-17 | |||
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| 0.2.2 | 2021-11-29 | |||
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| 0.2.1.1 | 2021-11-24 | |||
| 0.2.1 | 2021-10-15 | |||
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| 0.2.0 | 2021-09-16 | |||
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| 0.1.9 | 2021-09-16 | |||
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| 0.1 | 2021-06-02 | |||
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Issues with this package?
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