stereopy
Spatial transcriptomic analysis in python.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install stereopy
Dependencies
- scikit-image
- typing-extensions
- hvplot
- scipy
- packaging
- patsy
- statsmodels
- harmonypy
- gefpy
- matplotlib
- albumentations
- setuptools
- slideio
- dask
- louvain
- tensorflow-io-gcs-filesystem
- protobuf
- pandas
- igraph
- seaborn
- datashader
- loompy
- glog
- pyarrow
- tables
- anndata
- colorcet
- spatialpandas
- umap-learn
- opencv-python
- tensorflow
- natsort
- panel
- jinja2
- imageio
- keras
- numba
- tqdm
- arboreto
- param
- pillow
- scikit-learn
- tifffile
- leidenalg
- h5py
- bokeh
- torchvision
- hotspotsc
- urllib3
- holoviews
- requests
- squidpy
- torch
- joblib
- xarray
- phenograph
- numpy
- shapely
- kdepy
- distributed
- gtfparse
Releases
| Version | Released | Bullseye Python 3.9 |
Bookworm Python 3.11 |
Trixie Python 3.13 |
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| 1.6.1 | 2025-06-16 | ||||
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| 1.6.0 | 2025-02-24 | ||||
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| 1.5.1 | 2024-12-26 | ||||
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| 1.5.0 | 2024-11-08 | ||||
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| 1.4.0 | 2024-09-05 | ||||
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| 1.3.1 | 2024-06-28 | ||||
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| 1.3.0 | 2024-05-31 | ||||
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| 1.2.0 | 2024-03-29 | ||||
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| 1.1.0 | 2024-01-17 | ||||
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| 1.0.0 | 2023-12-04 | ||||
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| 0.14.0b1 pre-release | 2023-09-15 | ||||
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| 0.13.0b1 pre-release | 2023-07-11 | ||||
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| 0.12.1 | 2023-06-21 | ||||
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| 0.12.0 | 2023-04-28 | ||||
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| 0.11.0 | 2023-04-04 | ||||
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| 0.10.0 | 2023-02-22 | ||||
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| 0.9.0 | 2023-01-10 | ||||
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| 0.8.0 | 2022-12-02 | ||||
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| 0.7.0 | 2022-11-17 | ||||
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| 0.6.0 | 2022-09-30 | ||||
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| 0.5.1 | 2022-09-04 | ||||
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| 0.5.0 | 2022-09-02 | ||||
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| 0.4.0 | 2022-07-31 | ||||
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| 0.3.1 | 2022-06-30 | ||||
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| 0.3.0 | 2022-06-10 | ||||
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| 0.2.4 | 2022-01-19 | ||||
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| 0.2.3 | 2022-01-17 | ||||
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| 0.2.2 | 2021-11-29 | ||||
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| 0.2.1.1 | 2021-11-24 | ||||
| 0.2.1 | 2021-10-15 | ||||
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| 0.2.0 | 2021-09-16 | ||||
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| 0.1.9 | 2021-09-16 | ||||
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| 0.1 | 2021-06-02 | ||||
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Issues with this package?
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