piwheels

ragbio

A study-aware biomedical RAG framework for PubMed retrieval, citation-grounded summaries, and downstream omics integration

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install ragbio

Dependencies

• pandas
• neo4j
• biopython
• langchain
• python-dotenv
• ollama
• tqdm
• beautifulsoup4
• langchain-community
• requests
• faiss-cpu

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
2.0.3	2026-04-18
ragbio-2.0.3-py3-none-any.whl (161 KB)
2.0.2	2026-04-11
ragbio-2.0.2-py3-none-any.whl (160 KB)
2.0.1	2026-01-23
ragbio-2.0.1-py3-none-any.whl (160 KB)
0.2.0	2026-01-19
ragbio-0.2.0-py3-none-any.whl (161 KB)
0.1.19	2026-04-11
ragbio-0.1.19-py3-none-any.whl (160 KB)
0.1.18	2026-01-23
ragbio-0.1.18-py3-none-any.whl (160 KB)
0.1.16	2025-12-24
ragbio-0.1.16-py3-none-any.whl (307 KB)
0.1.15	2025-12-22
ragbio-0.1.15-py3-none-any.whl (307 KB)
0.1.14	2025-12-22
ragbio-0.1.14-py3-none-any.whl (306 KB)
0.1.13	2025-12-11
ragbio-0.1.13-py3-none-any.whl (305 KB)
0.1.12	2025-12-11
ragbio-0.1.12-py3-none-any.whl (304 KB)

Issues with this package?

• Search issues for this package
• Package or version missing? Open a new issue
• Something else? Open a new issue