piwheels

spagrn

A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install spagrn

Dependencies

• dask
• arboreto
• hotspotsc
• seaborn
• pandas
• scanpy
• scikit-learn
• matplotlib
• pyscenic
• anndata
• ctxcore
• numpy
• scipy

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
1.1.22b0 pre-release yanked	2025-04-10
1.1.21b0 pre-release yanked	2025-04-10
1.1.4	2025-04-14
1.1.4b0 pre-release	2025-04-11
1.1.3 yanked	2025-04-11
1.1.3b0 pre-release yanked	2025-04-11
1.1.2	2025-04-10
1.1.2b0 pre-release	2025-04-10
1.1.1 yanked	2025-04-10
1.1.0 yanked	2025-04-10
1.1.0b0 pre-release	2025-01-02
1.0.7	2023-11-16
spagrn-1.0.7-py3-none-any.whl (52 KB)
1.0.6	2023-11-15
spagrn-1.0.6-py3-none-any.whl (47 KB)
1.0.5	2023-06-16
spagrn-1.0.5-py3-none-any.whl (29 KB)
1.0.4	2023-04-23
spagrn-1.0.4-py3-none-any.whl (29 KB)
1.0.3 yanked	2023-04-23
spagrn-1.0.3-py3-none-any.whl (29 KB)
1.0.2 yanked	2023-04-23
1.0.1 yanked	2023-04-21
spagrn-1.0.1-py3-none-any.whl (28 KB)
1.0.0 yanked	2023-04-21
spagrn-1.0.0-py3-none-any.whl (28 KB)

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