piwheels

SyMBac

A package for generating synthetic images of bacteria in phase contrast or fluorescence. Used for creating training data for machine learning segmentation and tracking algorithms.

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install symbac

Dependencies

• joblib
• scipy
• zarr
• tifffile
• ipython
• pymunk
• natsort
• tqdm
• cmaes
• noise
• scikit-image
• matplotlib-scalebar
• optuna
• matplotlib
• pandas
• ipywidgets
• pyglet
• psfmodels
• napari

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
0.5.2	2026-03-04
symbac-0.5.2-py3-none-any.whl (208 KB)
0.5.1	2026-03-04
symbac-0.5.1-py3-none-any.whl (208 KB)
0.5.0	2026-03-04
symbac-0.5.0-py3-none-any.whl (208 KB)
0.4.0	2024-03-06
0.3.1	2022-11-29
SyMBac-0.3.1-py3-none-any.whl (187 KB)
0.3.0	2022-11-29
SyMBac-0.3.0-py3-none-any.whl (187 KB)
0.2.0	2022-08-09
SyMBac-0.2.0-py3-none-any.whl (149 KB)
0.1.10	2021-12-30
SyMBac-0.1.10-py3-none-any.whl (156 KB)
0.1.9	2021-12-16
SyMBac-0.1.9-py3-none-any.whl (156 KB)
0.1.8	2021-12-16
SyMBac-0.1.8-py3-none-any.whl (156 KB)
0.1.6	2021-11-30
SyMBac-0.1.6-py3-none-any.whl (154 KB)
0.1.5	2021-10-26
SyMBac-0.1.5-py3-none-any.whl (154 KB)
0.1.4	2021-10-25
SyMBac-0.1.4-py3-none-any.whl (75 KB)
0.1.3	2021-10-25
SyMBac-0.1.3-py3-none-any.whl (76 KB)
0.1.2	2021-10-25
SyMBac-0.1.2-py3-none-any.whl (75 KB)
0.1.0	2021-10-24
SyMBac-0.1.0-py3-none-any.whl (34 KB)

Issues with this package?

• Search issues for this package
• Package or version missing? Open a new issue
• Something else? Open a new issue