CASSIA
CASSIA (Cell type Annotation using Specialized System with Integrated AI) is a Python package for automated cell type annotation in single-cell RNA sequencing data using large language models.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install cassia
Dependencies
Releases
| Version | Released | Bullseye Python 3.9 |
Bookworm Python 3.11 |
Trixie Python 3.13 |
Files |
|---|---|---|---|---|---|
| 0.3.18 | 2025-12-13 | ||||
| 0.3.17 | 2025-12-12 | ||||
| 0.3.16 | 2025-12-12 | ||||
| 0.3.14 | 2025-12-07 | ||||
| 0.3.13 | 2025-12-07 | ||||
| 0.3.12 | 2025-12-06 | ||||
| 0.3.11 | 2025-12-06 | ||||
| 0.3.10 | 2025-12-06 | ||||
| 0.3.9 | 2025-12-04 | ||||
| 0.3.8 | 2025-12-04 | ||||
| 0.3.7 | 2025-12-03 | ||||
| 0.3.6 | 2025-12-03 | ||||
| 0.3.5 | 2025-12-03 | ||||
| 0.3.4 | 2025-12-03 | ||||
| 0.3.3 | 2025-12-03 | ||||
| 0.3.2 | 2025-12-02 | ||||
| 0.3.1 | 2025-12-02 | ||||
| 0.3.1.dev5 pre-release | 2025-11-30 | ||||
| 0.2.0 | 2025-04-20 | ||||
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| 0.1.9 | 2024-12-03 | ||||
| 0.1.8 | 2024-12-03 | ||||
| 0.1.7 | 2024-12-02 | ||||
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| 0.1.6 | 2024-11-24 | ||||
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| 0.1.5 | 2024-11-24 | ||||
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| 0.1.4 | 2024-11-24 | ||||
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| 0.1.3 | 2024-11-24 | ||||
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| 0.1.2 | 2024-11-24 | ||||
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| 0.1.1 | 2024-11-24 | ||||
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| 0.1 | 2024-11-23 | ||||
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