piwheels

Mikado

A Python3 annotation program to select the best gene model in each locus

Installation

In a virtualenv (see these instructions if you need to create one):

pip3 install mikado

Dependencies

• marshmallow-dataclass
• pandas
• python-rapidjson
• biopython
• typeguard
• sqlalchemy-utils
• snakemake
• networkx
• sqlalchemy
• scipy
• msgpack
• drmaa
• pysam
• pyfaidx
• pytest
• tabulate
• numpy
• pyyaml
• marshmallow
• hypothesis
• pip
• dataclasses
• toml
• docutils

Releases

Version	Released	Bullseye Python 3.9	Bookworm Python 3.11	Trixie Python 3.13	Files
2.3.4	2022-06-09
Mikado-2.3.4-cp39-cp39-linux_armv6l.whl (25 MB) Mikado-2.3.4-cp39-cp39-linux_armv7l.whl (25 MB) Mikado-2.3.4-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.3.4-cp37-cp37m-linux_armv7l.whl (24 MB)
2.3.3	2021-11-12
Mikado-2.3.3-cp37-cp37m-linux_armv6l.whl (25 MB) Mikado-2.3.3-cp37-cp37m-linux_armv7l.whl (25 MB) Mikado-2.3.3-cp39-cp39-linux_armv6l.whl (25 MB) Mikado-2.3.3-cp39-cp39-linux_armv7l.whl (25 MB)
2.3.2	2021-09-03
Mikado-2.3.2-cp37-cp37m-linux_armv6l.whl (25 MB) Mikado-2.3.2-cp37-cp37m-linux_armv7l.whl (25 MB) Mikado-2.3.2-cp39-cp39-linux_armv6l.whl (25 MB) Mikado-2.3.2-cp39-cp39-linux_armv7l.whl (25 MB)
2.3.1	2021-08-20
Mikado-2.3.1-cp37-cp37m-linux_armv6l.whl (25 MB) Mikado-2.3.1-cp37-cp37m-linux_armv7l.whl (25 MB) Mikado-2.3.1-cp39-cp39-linux_armv6l.whl (25 MB) Mikado-2.3.1-cp39-cp39-linux_armv7l.whl (25 MB)
2.3.0	2021-05-25
Mikado-2.3.0-cp37-cp37m-linux_armv6l.whl (26 MB) Mikado-2.3.0-cp37-cp37m-linux_armv7l.whl (26 MB) Mikado-2.3.0-cp39-cp39-linux_armv6l.whl (26 MB) Mikado-2.3.0-cp39-cp39-linux_armv7l.whl (26 MB)
2.2.5	2021-04-12
Mikado-2.2.5-cp37-cp37m-linux_armv6l.whl (26 MB) Mikado-2.2.5-cp37-cp37m-linux_armv7l.whl (26 MB) Mikado-2.2.5-cp39-cp39-linux_armv6l.whl (26 MB) Mikado-2.2.5-cp39-cp39-linux_armv7l.whl (26 MB)
2.2.4	2021-04-06
Mikado-2.2.4-cp37-cp37m-linux_armv6l.whl (26 MB) Mikado-2.2.4-cp37-cp37m-linux_armv7l.whl (26 MB) Mikado-2.2.4-cp39-cp39-linux_armv6l.whl (26 MB) Mikado-2.2.4-cp39-cp39-linux_armv7l.whl (26 MB)
2.2.3	2021-03-24
Mikado-2.2.3-cp37-cp37m-linux_armv6l.whl (26 MB) Mikado-2.2.3-cp37-cp37m-linux_armv7l.whl (26 MB) Mikado-2.2.3-cp39-cp39-linux_armv6l.whl (26 MB) Mikado-2.2.3-cp39-cp39-linux_armv7l.whl (26 MB)
2.2.2	2021-03-19
Mikado-2.2.2-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.2.2-cp37-cp37m-linux_armv7l.whl (24 MB) Mikado-2.2.2-cp39-cp39-linux_armv6l.whl (24 MB) Mikado-2.2.2-cp39-cp39-linux_armv7l.whl (24 MB)
2.2.1	2021-03-17
Mikado-2.2.1-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.2.1-cp37-cp37m-linux_armv7l.whl (24 MB) Mikado-2.2.1-cp39-cp39-linux_armv6l.whl (24 MB) Mikado-2.2.1-cp39-cp39-linux_armv7l.whl (24 MB)
2.2.0	2021-03-15
Mikado-2.2.0-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.2.0-cp37-cp37m-linux_armv7l.whl (24 MB) Mikado-2.2.0-cp39-cp39-linux_armv6l.whl (24 MB) Mikado-2.2.0-cp39-cp39-linux_armv7l.whl (24 MB)
2.1.1	2021-02-23
Mikado-2.1.1-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.1.1-cp37-cp37m-linux_armv7l.whl (24 MB) Mikado-2.1.1-cp39-cp39-linux_armv6l.whl (24 MB) Mikado-2.1.1-cp39-cp39-linux_armv7l.whl (24 MB)
2.1.0	2021-02-22
Mikado-2.1.0-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.1.0-cp37-cp37m-linux_armv7l.whl (24 MB) Mikado-2.1.0-cp39-cp39-linux_armv6l.whl (24 MB) Mikado-2.1.0-cp39-cp39-linux_armv7l.whl (24 MB)
2.0.2	2021-02-13
Mikado-2.0.2-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.0.2-cp37-cp37m-linux_armv7l.whl (24 MB) Mikado-2.0.2-cp39-cp39-linux_armv6l.whl (24 MB) Mikado-2.0.2-cp39-cp39-linux_armv7l.whl (24 MB)
2.0.1	2021-02-09
Mikado-2.0.1-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.0.1-cp37-cp37m-linux_armv7l.whl (24 MB) Mikado-2.0.1-cp39-cp39-linux_armv6l.whl (24 MB) Mikado-2.0.1-cp39-cp39-linux_armv7l.whl (24 MB)
2.0	2021-01-28
Mikado-2.0-cp37-cp37m-linux_armv6l.whl (25 MB) Mikado-2.0-cp37-cp37m-linux_armv7l.whl (25 MB) Mikado-2.0-cp39-cp39-linux_armv6l.whl (25 MB) Mikado-2.0-cp39-cp39-linux_armv7l.whl (25 MB)
2.0rc2 pre-release	2020-04-13
Mikado-2.0rc2-cp35-cp35m-linux_armv7l.whl (23 MB) Mikado-2.0rc2-cp35-cp35m-linux_armv6l.whl (23 MB) Mikado-2.0rc2-cp37-cp37m-linux_armv7l.whl (24 MB) Mikado-2.0rc2-cp37-cp37m-linux_armv6l.whl (24 MB) Mikado-2.0rc2-cp39-cp39-linux_armv6l.whl (24 MB) Mikado-2.0rc2-cp39-cp39-linux_armv7l.whl (24 MB)
2.0rc1 pre-release	2020-04-09
Mikado-2.0rc1-cp35-cp35m-linux_armv6l.whl (23 MB) Mikado-2.0rc1-cp35-cp35m-linux_armv7l.whl (23 MB) Mikado-2.0rc1-cp37-cp37m-linux_armv6l.whl (23 MB) Mikado-2.0rc1-cp37-cp37m-linux_armv7l.whl (23 MB) Mikado-2.0rc1-cp39-cp39-linux_armv6l.whl (23 MB) Mikado-2.0rc1-cp39-cp39-linux_armv7l.whl (23 MB)
1.2.4	2018-08-08
Mikado-1.2.4-cp34-cp34m-linux_armv6l.whl (16 MB) Mikado-1.2.4-cp34-cp34m-linux_armv7l.whl (16 MB) Mikado-1.2.4-cp35-cp35m-linux_armv7l.whl (16 MB) Mikado-1.2.4-cp35-cp35m-linux_armv6l.whl (16 MB) Mikado-1.2.4-cp37-cp37m-linux_armv7l.whl (16 MB) Mikado-1.2.4-cp37-cp37m-linux_armv6l.whl (16 MB) Mikado-1.2.4-cp311-cp311-linux_armv6l.whl (17 MB) Mikado-1.2.4-cp311-cp311-linux_armv7l.whl (17 MB) mikado-1.2.4-cp313-cp313-linux_armv6l.whl (17 MB) mikado-1.2.4-cp313-cp313-linux_armv7l.whl (17 MB)
1.2.2	2018-05-10
Mikado-1.2.2-cp35-cp35m-linux_armv6l.whl (16 MB) Mikado-1.2.2-cp35-cp35m-linux_armv7l.whl (16 MB) Mikado-1.2.2-cp37-cp37m-linux_armv7l.whl (17 MB) Mikado-1.2.2-cp37-cp37m-linux_armv6l.whl (17 MB) Mikado-1.2.2-cp311-cp311-linux_armv6l.whl (17 MB) Mikado-1.2.2-cp311-cp311-linux_armv7l.whl (17 MB) mikado-1.2.2-cp313-cp313-linux_armv6l.whl (17 MB) mikado-1.2.2-cp313-cp313-linux_armv7l.whl (17 MB)
1.2.1	2018-05-04
Mikado-1.2.1-cp34-cp34m-linux_armv7l.whl (16 MB) Mikado-1.2.1-cp34-cp34m-linux_armv6l.whl (16 MB) Mikado-1.2.1-cp35-cp35m-linux_armv6l.whl (16 MB) Mikado-1.2.1-cp35-cp35m-linux_armv7l.whl (16 MB) Mikado-1.2.1-cp37-cp37m-linux_armv6l.whl (17 MB) Mikado-1.2.1-cp37-cp37m-linux_armv7l.whl (17 MB) Mikado-1.2.1-cp311-cp311-linux_armv6l.whl (17 MB) Mikado-1.2.1-cp311-cp311-linux_armv7l.whl (17 MB) mikado-1.2.1-cp313-cp313-linux_armv6l.whl (17 MB) mikado-1.2.1-cp313-cp313-linux_armv7l.whl (17 MB)
1.2	2018-05-03
Mikado-1.2-cp35-cp35m-linux_armv7l.whl (16 MB) Mikado-1.2-cp35-cp35m-linux_armv6l.whl (16 MB) Mikado-1.2-cp34-cp34m-linux_armv6l.whl (16 MB) Mikado-1.2-cp34-cp34m-linux_armv7l.whl (16 MB) Mikado-1.2-cp37-cp37m-linux_armv6l.whl (17 MB) Mikado-1.2-cp37-cp37m-linux_armv7l.whl (17 MB) Mikado-1.2-cp311-cp311-linux_armv6l.whl (17 MB) Mikado-1.2-cp311-cp311-linux_armv7l.whl (17 MB) Mikado-1.2-cp39-cp39-linux_armv6l.whl (17 MB) Mikado-1.2-cp39-cp39-linux_armv7l.whl (17 MB) mikado-1.2-cp313-cp313-linux_armv6l.whl (17 MB) mikado-1.2-cp313-cp313-linux_armv7l.whl (17 MB)
1.1	2017-12-08
Mikado-1.1-cp34-cp34m-linux_armv6l.whl (16 MB) Mikado-1.1-cp34-cp34m-linux_armv7l.whl (16 MB) Mikado-1.1-cp35-cp35m-linux_armv6l.whl (16 MB) Mikado-1.1-cp35-cp35m-linux_armv7l.whl (16 MB) Mikado-1.1-cp311-cp311-linux_armv6l.whl (17 MB) Mikado-1.1-cp311-cp311-linux_armv7l.whl (17 MB) mikado-1.1-cp313-cp313-linux_armv6l.whl (17 MB) mikado-1.1-cp313-cp313-linux_armv7l.whl (17 MB)
1.0	2017-03-22
Mikado-1.0-cp35-cp35m-linux_armv7l.whl (16 MB) Mikado-1.0-cp35-cp35m-linux_armv6l.whl (16 MB) Mikado-1.0-cp311-cp311-linux_armv6l.whl (17 MB) Mikado-1.0-cp311-cp311-linux_armv7l.whl (17 MB) mikado-1.0-cp313-cp313-linux_armv6l.whl (17 MB) mikado-1.0-cp313-cp313-linux_armv7l.whl (17 MB)
1.0.0b10 pre-release	2017-02-15
Mikado-1.0.0b10-cp35-cp35m-linux_armv7l.whl (16 MB) Mikado-1.0.0b10-cp35-cp35m-linux_armv6l.whl (16 MB) Mikado-1.0.0b10-cp311-cp311-linux_armv6l.whl (17 MB) Mikado-1.0.0b10-cp311-cp311-linux_armv7l.whl (17 MB) mikado-1.0.0b10-cp313-cp313-linux_armv6l.whl (17 MB) mikado-1.0.0b10-cp313-cp313-linux_armv7l.whl (17 MB)
1.0.0b9 pre-release	2017-01-20
Mikado-1.0.0b9-cp35-cp35m-linux_armv7l.whl (16 MB) Mikado-1.0.0b9-cp35-cp35m-linux_armv6l.whl (16 MB) Mikado-1.0.0b9-cp311-cp311-linux_armv6l.whl (17 MB) Mikado-1.0.0b9-cp311-cp311-linux_armv7l.whl (17 MB) mikado-1.0.0b9-cp313-cp313-linux_armv6l.whl (17 MB) mikado-1.0.0b9-cp313-cp313-linux_armv7l.whl (17 MB)
1.0.0b5.post1 pre-release	2016-08-19
Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv7l.whl (825 KB) Mikado-1.0.0b5.post1-cp35-cp35m-linux_armv6l.whl (825 KB) Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv7l.whl (887 KB) Mikado-1.0.0b5.post1-cp37-cp37m-linux_armv6l.whl (887 KB) Mikado-1.0.0b5.post1-cp311-cp311-linux_armv6l.whl (1 MB) Mikado-1.0.0b5.post1-cp311-cp311-linux_armv7l.whl (1 MB) mikado-1.0.0b5.post1-cp313-cp313-linux_armv6l.whl (1 MB) mikado-1.0.0b5.post1-cp313-cp313-linux_armv7l.whl (1 MB)

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