gtdbtk
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Installation
In a virtualenv (see these instructions if you need to create one):
pip3 install gtdbtk
Dependencies
Releases
Version | Released | Bullseye Python 3.9 |
Bookworm Python 3.11 |
Trixie Python 3.13 |
Files |
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2.5.2 | 2025-09-12 | ||||
2.5.1 | 2025-09-09 | ||||
2.5.0 | 2025-09-08 | ||||
2.4.1 | 2025-04-18 | ||||
2.4.0 | 2024-04-24 | ||||
2.3.2 | 2023-07-05 | ||||
2.3.0 | 2023-05-09 | ||||
2.2.6 | 2023-03-23 | ||||
2.2.5 | 2023-03-16 | ||||
2.2.4 | 2023-02-28 | ||||
2.2.3 | 2023-02-15 | ||||
2.2.2 | 2023-02-14 | ||||
2.2.1 | 2023-02-14 | ||||
2.2.0 | 2023-02-14 | ||||
2.1.1 | 2022-07-11 | ||||
2.1.0 | 2022-05-12 | ||||
2.0.0 | 2022-04-08 | ||||
1.7.0 | 2021-10-15 | ||||
1.6.0 | 2021-08-20 | ||||
1.5.1 | 2021-06-24 | ||||
1.5.0 | 2021-04-26 | ||||
1.4.1 | 2021-02-03 | ||||
1.4.0 | 2020-11-30 | ||||
1.3.0 | 2020-07-18 | ||||
1.2.0 | 2020-05-29 | ||||
1.1.1 | 2020-04-22 | ||||
1.1.0 | 2020-04-14 | ||||
1.0.2 | 2019-12-12 | ||||
1.0.1 | 2019-12-05 | ||||
1.0.0 | 2019-12-05 | ||||
0.3.3 | 2019-11-15 | ||||
0.3.2 | 2019-07-12 | ||||
0.3.1 | 2019-07-08 | ||||
0.3.0 | 2019-06-21 | ||||
0.2.2 | 2019-03-18 | ||||
0.2.1 | 2019-03-08 | ||||
0.1.6 | 2019-01-14 | ||||
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0.1.3 | 2018-09-21 | ||||
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0.1.2 | 2018-09-18 | ||||
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0.1.1 | 2018-08-30 | ||||
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0.1.0 | 2018-08-30 | ||||
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0.0.8b1 pre-release | 2018-06-20 | ||||
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0.0.7 | 2018-04-19 | ||||
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0.0.6 | 2018-04-19 | ||||
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0.0.5 | 2018-03-16 | ||||
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0.0.4b3 pre-release | 2018-03-08 | ||||
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0.0.4b2 pre-release | 2018-03-08 | ||||
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0.0.4b1 pre-release | 2018-03-01 | ||||
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0.0.4b0 pre-release | 2018-02-28 | ||||
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0.0.3 | 2018-02-27 | ||||
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0.0.2 | 2018-02-27 | ||||
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0.0.1 | 2017-08-22 | ||||
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